RETREG3 (reticulophagy regulator family member 3) - Rat Genome Database

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Gene: RETREG3 (reticulophagy regulator family member 3) Chlorocebus sabaeus
Analyze
Symbol: RETREG3
Name: reticulophagy regulator family member 3
RGD ID: 18440221
Description: ENCODES a protein that exhibits endoplasmic reticulum-autophagosome adaptor activity (ortholog); INVOLVED IN collagen catabolic process (ortholog); endoplasmic reticulum organization (ortholog); endoplasmic reticulum tubular network organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum tubular network (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAM134C; family with sequence similarity 134 member C; protein FAM134C; reticulophagy regulator 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,680,831 - 63,708,160 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,680,890 - 63,710,015 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,474,127 - 34,503,820 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RETREG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,680,831 - 63,708,160 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,680,890 - 63,710,015 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,474,127 - 34,503,820 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RETREG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,579,508 - 42,609,427 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,579,513 - 42,610,623 (-)EnsemblGRCh38hg38GRCh38
GRCh371740,731,526 - 40,761,445 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361737,985,059 - 38,014,928 (-)NCBINCBI36Build 36hg18NCBI36
Celera1737,387,436 - 37,417,341 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1736,496,172 - 36,526,037 (-)NCBIHuRef
CHM1_11740,967,335 - 40,997,209 (-)NCBICHM1_1
T2T-CHM13v2.01743,436,673 - 43,466,572 (-)NCBIT2T-CHM13v2.0
Retreg3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,987,148 - 101,010,720 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11100,987,148 - 101,010,719 (-)EnsemblGRCm39 Ensembl
GRCm3811101,096,322 - 101,119,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,096,322 - 101,119,893 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711100,957,636 - 100,981,157 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611100,912,412 - 100,935,933 (-)NCBIMGSCv36mm8
Celera11112,392,424 - 112,415,945 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1164.2NCBI
Retreg3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,529,048 - 86,552,873 (-)NCBIGRCr8
mRatBN7.21086,028,767 - 86,052,575 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,028,774 - 86,052,692 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,065,276 - 91,089,086 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,544,049 - 90,567,863 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01085,937,216 - 85,961,025 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,006,595 - 89,030,595 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,006,595 - 89,030,595 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,805,091 - 88,829,091 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,113,395 - 90,137,543 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1084,746,462 - 84,770,275 (-)NCBICelera
Cytogenetic Map10q31NCBI
Retreg3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,468,845 - 16,486,773 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,468,845 - 16,486,773 (-)NCBIChiLan1.0ChiLan1.0
RETREG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,375,425 - 22,405,094 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,265,580 - 24,295,083 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,707,649 - 14,737,027 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,931,260 - 14,958,511 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,931,260 - 14,958,511 (+)Ensemblpanpan1.1panPan2
RETREG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,363,729 - 20,385,580 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,363,823 - 20,385,592 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,825,556 - 19,847,433 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,082,652 - 21,104,534 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl921,082,776 - 21,102,778 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,868,516 - 19,890,379 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0920,133,752 - 20,155,605 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0920,237,775 - 20,259,647 (+)NCBIUU_Cfam_GSD_1.0
Retreg3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,717,594 - 19,739,965 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,334,464 - 17,357,570 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,334,458 - 17,357,544 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RETREG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,179,078 - 20,243,293 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,220,993 - 20,243,299 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,433,577 - 20,456,000 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Retreg3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,516,315 - 1,535,162 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,516,339 - 1,535,162 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 15 47
Low 5 13
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000001291   ⟹   ENSCSAP00000014785
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1663,680,890 - 63,710,015 (+)Ensembl
RefSeq Acc Id: XM_008012617   ⟹   XP_008010808
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11663,680,842 - 63,708,160 (+)NCBI
Vero_WHO_p1.0NW_02366607734,474,169 - 34,503,820 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008012618   ⟹   XP_008010809
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11663,680,831 - 63,705,966 (+)NCBI
Vero_WHO_p1.0NW_02366607734,474,127 - 34,503,820 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008010808 (Get FASTA)   NCBI Sequence Viewer  
  XP_008010809 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014785
  ENSCSAP00000014785.1
Reference Protein Sequences
RefSeq Acc Id: XP_008010809   ⟸   XM_008012618
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008010808   ⟸   XM_008012617
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S1P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000014785   ⟸   ENSCSAT00000001291


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003264 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001291.1 UniProtKB/TrEMBL
InterPro RETREG1/3 UniProtKB/TrEMBL
KEGG Report csab:103243399 UniProtKB/TrEMBL
NCBI Gene RETREG3 ENTREZGENE
PANTHER PTHR28659 UniProtKB/TrEMBL
  PTHR28659:SF1 UniProtKB/TrEMBL
UniProt A0A0D9S1P6 ENTREZGENE, UniProtKB/TrEMBL