ZC3H12B (zinc finger CCCH-type containing 12B)

Gene: ZC3H12B (zinc finger CCCH-type containing 12B) Chlorocebus sabaeus

Analyze

Symbol:

ZC3H12B

Name:

zinc finger CCCH-type containing 12B

RGD ID:

18438834

Description:

ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); osteopathia striata with cranial sclerosis (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

probable ribonuclease ZC3H12B

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	55,152,447 - 55,498,218 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666083	2,365,607 - 2,794,233 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

osteopathia striata with cranial sclerosis (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

WIEACKER-WOLFF SYNDROME, FEMALE-RESTRICTED (ISO)

Wilson-Turner syndrome (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

ZC3H12B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	55,152,447 - 55,498,218 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666083	2,365,607 - 2,794,233 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

ZC3H12B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	65,034,826 - 65,507,887 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	65,034,788 - 65,507,887 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	64,254,706 - 64,727,767 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	64,625,431 - 64,644,492 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	65,055,755 - 65,074,911 (+)	NCBI		Celera
Cytogenetic Map	X	q11.2-q12	NCBI
HuRef	X	58,536,997 - 58,555,927 (+)	NCBI		HuRef
CHM1_1	X	64,601,682 - 64,620,833 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	63,460,180 - 63,934,332 (+)	NCBI		T2T-CHM13v2.0

Zc3h12b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	94,755,206 - 94,976,262 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	94,755,284 - 94,976,243 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	95,711,583 - 95,932,656 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	95,711,678 - 95,932,637 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	92,907,017 - 93,123,309 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	91,914,397 - 92,127,477 (+)	NCBI		MGSCv36	mm8
Celera	X	82,732,867 - 82,942,791 (+)	NCBI		Celera
Cytogenetic Map	X	C3	NCBI
cM Map	X	42.14	NCBI

Zc3h12b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	64,625,479 - 64,858,634 (+)	NCBI		GRCr8
mRatBN7.2	X	60,615,616 - 60,849,278 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	60,615,682 - 60,844,832 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	X	65,040,032 - 65,074,857 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	65,040,104 - 65,074,712 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	65,882,161 - 65,916,894 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	83,528,345 - 83,561,515 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	61,034,060 - 61,259,514 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

Zc3h12b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955475	5,126,158 - 5,162,108 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955475	4,676,190 - 5,162,108 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZC3H12B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	64,570,892 - 65,032,083 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	64,574,426 - 65,035,687 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	54,162,659 - 54,623,859 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	64,680,085 - 64,699,055 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	64,563,916 - 64,699,055 (+)	Ensembl	panpan1.1		panPan2

ZC3H12B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	50,295,906 - 50,507,290 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	50,296,114 - 50,503,019 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	40,751,760 - 41,346,169 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	51,271,151 - 51,466,110 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	48,844,047 - 49,437,341 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	50,184,370 - 50,783,525 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	50,090,364 - 50,693,773 (+)	NCBI		UU_Cfam_GSD_1.0

Zc3h12b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	51,818,609 - 52,114,221 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936635	2,588,510 - 2,641,616 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936635	2,580,693 - 2,690,297 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZC3H12B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	51,502,732 - 51,749,625 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	51,231,526 - 51,749,627 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	58,099,740 - 58,372,807 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Zc3h12b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624898	1,750,494 - 1,802,364 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624898	1,750,550 - 1,802,233 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007991916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007991917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007991918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007991919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037994687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037994688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037994689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037994690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037994693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037994694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037994695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_037994687 ⟹ XP_037850615

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666083	2,365,607 - 2,794,233 (+)	NCBI

RefSeq Acc Id:

XM_037994688 ⟹ XP_037850616

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666083	2,365,607 - 2,794,233 (+)	NCBI

RefSeq Acc Id:

XM_037994689 ⟹ XP_037850617

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666083	2,365,607 - 2,794,233 (+)	NCBI

RefSeq Acc Id:

XM_037994690 ⟹ XP_037850618

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666083	2,400,287 - 2,794,233 (+)	NCBI

RefSeq Acc Id:

XM_037994693 ⟹ XP_037850621

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666083	2,384,396 - 2,794,233 (+)	NCBI

RefSeq Acc Id:

XM_037994694 ⟹ XP_037850622

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666083	2,365,607 - 2,794,233 (+)	NCBI

RefSeq Acc Id:

XM_037994695 ⟹ XP_037850623

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666083	2,365,607 - 2,794,233 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_037850615	(Get FASTA)	NCBI Sequence Viewer
	XP_037850616	(Get FASTA)	NCBI Sequence Viewer
	XP_037850617	(Get FASTA)	NCBI Sequence Viewer
	XP_037850618	(Get FASTA)	NCBI Sequence Viewer
	XP_037850621	(Get FASTA)	NCBI Sequence Viewer
	XP_037850622	(Get FASTA)	NCBI Sequence Viewer
	XP_037850623	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_037850622 ⟸ XM_037994694

RefSeq Acc Id:

XP_037850623 ⟸ XM_037994695

RefSeq Acc Id:

XP_037850617 ⟸ XM_037994689

RefSeq Acc Id:

XP_037850616 ⟸ XM_037994688

RefSeq Acc Id:

XP_037850615 ⟸ XM_037994687

RefSeq Acc Id:

XP_037850621 ⟸ XM_037994693

RefSeq Acc Id:

XP_037850618 ⟸ XM_037994690

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	ZC3H12B	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar