CD19 (CD19 molecule) - Rat Genome Database

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Gene: CD19 (CD19 molecule) Chlorocebus sabaeus
Analyze
Symbol: CD19
Name: CD19 molecule
RGD ID: 18436814
Description: INVOLVED IN antigen receptor-mediated signaling pathway (ortholog); B cell mediated immunity (ortholog); B cell receptor signaling pathway (ortholog); ASSOCIATED WITH agammaglobulinemia (ortholog); chromosome 16p11.2 deletion syndrome, 220-kb (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN plasma membrane (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: B-lymphocyte antigen CD19; B-lymphocyte antigen CD19-like; LOC103230281; LOC103231655
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,140,703 - 26,145,447 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660683,488,252 - 3,496,819 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CD19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,140,703 - 26,145,447 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660683,488,252 - 3,496,819 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CD19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381628,931,971 - 28,939,342 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1628,931,965 - 28,939,342 (+)EnsemblGRCh38hg38GRCh38
GRCh371628,943,292 - 28,950,663 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361628,850,761 - 28,858,164 (+)NCBINCBI36Build 36hg18NCBI36
Build 341628,850,778 - 28,858,164NCBI
Celera1627,898,547 - 27,905,955 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1626,811,236 - 26,818,644 (+)NCBIHuRef
CHM1_11629,955,058 - 29,962,466 (+)NCBICHM1_1
T2T-CHM13v2.01629,213,087 - 29,220,458 (+)NCBIT2T-CHM13v2.0
Cd19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,007,620 - 126,016,401 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,007,622 - 126,014,061 (-)EnsemblGRCm39 Ensembl
GRCm387126,408,448 - 126,415,148 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,408,450 - 126,414,889 (-)EnsemblGRCm38mm10GRCm38
MGSCv377133,551,962 - 133,558,384 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,199,599 - 126,205,984 (-)NCBIMGSCv36mm8
Celera7126,260,695 - 126,267,103 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.01NCBI
Cd19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,417,853 - 190,424,494 (-)NCBIGRCr8
mRatBN7.21180,987,286 - 180,993,920 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,987,286 - 180,993,975 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,317,795 - 189,324,202 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01196,503,868 - 196,510,275 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01189,191,831 - 189,198,238 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01197,815,422 - 197,822,123 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1197,815,413 - 197,821,936 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01204,797,142 - 204,803,811 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,501,247 - 185,507,665 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,651,237 - 185,657,781 (-)NCBI
Celera1178,647,453 - 178,653,862 (-)NCBICelera
Cytogenetic Map1q36NCBI
Cd19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554936,540,160 - 6,544,077 (-)NCBIChiLan1.0ChiLan1.0
CD19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21831,817,925 - 31,830,234 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11636,633,431 - 36,647,555 (-)NCBINHGRI_mPanPan1
PanPan1.11629,320,734 - 29,327,860 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1629,320,734 - 29,327,481 (+)Ensemblpanpan1.1panPan2
CD19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,419,092 - 18,425,524 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,418,241 - 18,425,400 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,996,893 - 20,002,738 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,554,690 - 18,560,536 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,553,713 - 18,560,534 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,354,194 - 18,360,033 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,268,778 - 18,274,610 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,585,154 - 18,591,002 (+)NCBIUU_Cfam_GSD_1.0
Cd19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,696,040 - 123,702,092 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,793,891 - 11,804,162 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650111,793,903 - 11,807,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,592,880 - 18,601,263 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,592,785 - 18,601,273 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,778,828 - 18,787,202 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cd19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478212,845,432 - 12,850,576 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478212,844,148 - 12,850,770 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 17
Low 31 3 23
Below cutoff 5 32

Sequence


Reference Sequences
RefSeq Acc Id: XM_037989709   ⟹   XP_037845637
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660683,488,252 - 3,496,819 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037845637 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002624.1
Reference Protein Sequences
RefSeq Acc Id: XP_037845637   ⟸   XM_037989709


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006332 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004369.1 UniProtKB/TrEMBL
InterPro CD19 UniProtKB/TrEMBL
NCBI Gene LOC103231655 ENTREZGENE
PANTHER B-LYMPHOCYTE ANTIGEN CD19 UniProtKB/TrEMBL
  PTHR16674 UniProtKB/TrEMBL
UniProt A0A0D9R1Y5_CHLSB UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 CD19  CD19 molecule  LOC103231655  B-lymphocyte antigen CD19  Symbol and/or name change 5135510 APPROVED
2020-12-03 LOC103231655  B-lymphocyte antigen CD19  LOC103230281  B-lymphocyte antigen CD19-like  Data merged from RGD:18626062 737654 PROVISIONAL