ARL11 (ADP ribosylation factor like GTPase 11) - Rat Genome Database

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Gene: ARL11 (ADP ribosylation factor like GTPase 11) Chlorocebus sabaeus
Analyze
Symbol: ARL11
Name: ADP ribosylation factor like GTPase 11
RGD ID: 18430401
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); nucleotide binding (inferred); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP-ribosylation factor-like protein 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1327,544,990 - 27,550,306 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl327,547,359 - 27,547,949 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605716,333,716 - 16,338,843 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARL11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1327,544,990 - 27,550,306 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl327,547,359 - 27,547,949 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605716,333,716 - 16,338,843 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ARL11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381349,628,507 - 49,633,872 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1349,628,507 - 49,633,872 (+)EnsemblGRCh38hg38GRCh38
GRCh371350,202,643 - 50,208,008 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361349,100,625 - 49,105,732 (+)NCBINCBI36Build 36hg18NCBI36
Build 341349,100,435 - 49,106,009NCBI
Celera1331,257,372 - 31,262,945 (+)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1330,995,906 - 31,001,479 (+)NCBIHuRef
CHM1_11350,169,956 - 50,175,529 (+)NCBICHM1_1
T2T-CHM13v2.01348,847,427 - 48,852,792 (+)NCBIT2T-CHM13v2.0
Arl11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391461,543,740 - 61,549,386 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1461,547,202 - 61,549,385 (+)EnsemblGRCm39 Ensembl
GRCm381461,306,290 - 61,311,937 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1461,309,753 - 61,311,936 (+)EnsemblGRCm38mm10GRCm38
MGSCv371461,928,590 - 61,930,773 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361460,263,863 - 60,266,046 (+)NCBIMGSCv36mm8
Celera1459,078,077 - 59,080,081 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1432.66NCBI
Arl11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81539,659,404 - 39,661,651 (+)NCBIGRCr8
mRatBN7.21535,483,330 - 35,485,579 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1535,480,018 - 35,496,596 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1537,348,246 - 37,350,384 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01538,498,890 - 38,501,028 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01536,944,125 - 36,946,271 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01541,639,985 - 41,645,685 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1541,643,541 - 41,645,685 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01545,448,923 - 45,451,069 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41540,458,780 - 40,460,926 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11540,474,479 - 40,476,626 (+)NCBI
Celera1535,180,893 - 35,182,952 (+)NCBICelera
Cytogenetic Map15p12NCBI
Arl11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554313,086,983 - 3,090,423 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554313,086,983 - 3,090,423 (+)NCBIChiLan1.0ChiLan1.0
ARL11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21451,067,071 - 51,071,028 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11349,718,749 - 49,722,670 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01330,767,431 - 30,770,962 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11349,516,084 - 49,519,462 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1349,518,030 - 49,518,620 (+)Ensemblpanpan1.1panPan2
Arl11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945159,201,892 - 159,204,115 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365652,686,783 - 2,687,377 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,095,974 - 18,099,819 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,097,723 - 18,100,425 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,412,359 - 18,414,343 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Arl11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247485,023,391 - 5,025,131 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247485,023,391 - 5,025,389 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 16 10 16
Low 20 10 43
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007960414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000018702   ⟹   ENSCSAP00000018145
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl327,547,359 - 27,547,949 (+)Ensembl
RefSeq Acc Id: XM_007960414   ⟹   XP_007958605
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1327,544,990 - 27,550,306 (+)NCBI
Vero_WHO_p1.0NW_02366605716,333,716 - 16,338,843 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007958605 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018145
  ENSCSAP00000018145.1
RefSeq Acc Id: XP_007958605   ⟸   XM_007960414
- UniProtKB: A0A0D9SBA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018145   ⟸   ENSCSAT00000018702


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018612 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018702.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase_ARF UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
KEGG Report csab:103214427 UniProtKB/TrEMBL
NCBI Gene ARL11 ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 11 UniProtKB/TrEMBL
  PTHR11711 UniProtKB/TrEMBL
Pfam Arf UniProtKB/TrEMBL
PRINTS SAR1GTPBP UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  SAR UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9SBA6 ENTREZGENE, UniProtKB/TrEMBL