PTAR1 (protein prenyltransferase alpha subunit repeat containing 1) - Rat Genome Database

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Gene: PTAR1 (protein prenyltransferase alpha subunit repeat containing 1) Chlorocebus sabaeus
Analyze
Symbol: PTAR1
Name: protein prenyltransferase alpha subunit repeat containing 1
RGD ID: 18429609
Description: ENCODES a protein that exhibits prenyltransferase activity (inferred); protein prenyltransferase activity (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein prenyltransferase alpha subunit repeat-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11280,765,535 - 80,821,819 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1280,774,417 - 80,821,717 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603869,182,052 - 69,231,387 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PTAR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11280,765,535 - 80,821,819 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1280,774,417 - 80,821,717 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603869,182,052 - 69,231,387 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PTAR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38969,709,525 - 69,760,011 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl969,709,522 - 69,760,011 (-)EnsemblGRCh38hg38GRCh38
GRCh37972,324,441 - 72,374,927 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36971,514,258 - 71,564,696 (-)NCBINCBI36Build 36hg18NCBI36
Celera942,914,816 - 42,965,239 (-)NCBICelera
Cytogenetic Map9q21.12NCBI
HuRef942,163,635 - 42,214,476 (-)NCBIHuRef
CHM1_1972,470,914 - 72,521,340 (-)NCBICHM1_1
T2T-CHM13v2.0981,876,142 - 81,926,623 (-)NCBIT2T-CHM13v2.0
Ptar1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391923,664,728 - 23,710,249 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1923,664,793 - 23,709,032 (+)EnsemblGRCm39 Ensembl
GRCm381923,687,361 - 23,732,885 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1923,687,429 - 23,731,668 (+)EnsemblGRCm38mm10GRCm38
MGSCv371923,761,890 - 23,795,619 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361923,754,503 - 23,787,619 (+)NCBIMGSCv36mm8
Celera1924,447,989 - 24,481,773 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1918.45NCBI
Ptar1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81230,709,731 - 230,753,380 (+)NCBIGRCr8
mRatBN7.21221,283,306 - 221,326,861 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,283,415 - 221,327,073 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1229,717,742 - 229,767,783 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,647,804 - 236,697,839 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01229,465,840 - 229,515,871 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01241,501,679 - 241,557,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1241,501,679 - 241,557,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,783,205 - 248,838,996 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,024,689 - 227,069,914 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1549,387,260 - 49,387,780 (+)NCBI
Celera1218,495,472 - 218,538,509 (+)NCBICelera
Cytogenetic Map1q51NCBI
Ptar1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554343,309,811 - 3,348,226 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554343,309,819 - 3,356,746 (+)NCBIChiLan1.0ChiLan1.0
PTAR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21168,914,342 - 68,964,921 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1968,920,281 - 68,972,696 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0955,037,001 - 55,087,537 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1968,471,672 - 68,522,085 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl968,480,499 - 68,522,064 (-)Ensemblpanpan1.1panPan2
PTAR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1187,661,829 - 87,759,728 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl187,706,760 - 87,752,012 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha188,129,364 - 88,228,101 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0188,209,461 - 88,308,042 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl188,254,903 - 88,304,455 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1187,864,953 - 87,963,471 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0187,571,131 - 87,669,843 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0188,334,593 - 88,433,384 (+)NCBIUU_Cfam_GSD_1.0
Ptar1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947135,191,520 - 135,236,895 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365035,944,098 - 5,990,077 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365035,943,767 - 5,981,427 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTAR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,032,879 - 223,089,663 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,028,530 - 223,089,679 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21249,446,953 - 249,501,816 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ptar1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247363,293,697 - 3,334,014 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247363,293,695 - 3,342,492 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 10 18 48
Low 26 2 12
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000006467   ⟹   ENSCSAP00000004669
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1280,774,417 - 80,821,717 (-)Ensembl
RefSeq Acc Id: XM_007969441   ⟹   XP_007967632
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11280,774,169 - 80,821,816 (-)NCBI
Vero_WHO_p1.0NW_02366603869,182,052 - 69,231,386 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007969442   ⟹   XP_007967633
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11280,765,535 - 80,821,819 (-)NCBI
Vero_WHO_p1.0NW_02366603869,182,052 - 69,231,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007969443   ⟹   XP_007967634
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11280,774,169 - 80,821,819 (-)NCBI
Vero_WHO_p1.0NW_02366603869,182,052 - 69,231,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037998475   ⟹   XP_037854403
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603869,182,052 - 69,212,252 (-)NCBI
RefSeq Acc Id: XR_005240446
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603869,182,052 - 69,231,365 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007967632 (Get FASTA)   NCBI Sequence Viewer  
  XP_007967633 (Get FASTA)   NCBI Sequence Viewer  
  XP_007967634 (Get FASTA)   NCBI Sequence Viewer  
  XP_037854403 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004669
  ENSCSAP00000004669.1
Reference Protein Sequences
RefSeq Acc Id: XP_007967633   ⟸   XM_007969442
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007967634   ⟸   XM_007969443
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R7T0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967632   ⟸   XM_007969441
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCSAP00000004669   ⟸   ENSCSAT00000006467
RefSeq Acc Id: XP_037854403   ⟸   XM_037998475
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008413 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006467.1 UniProtKB/TrEMBL
Gene3D-CATH Protein prenylyltransferase UniProtKB/TrEMBL
InterPro Prenyl_trans_a UniProtKB/TrEMBL
NCBI Gene PTAR1 ENTREZGENE
PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT UniProtKB/TrEMBL
  PROTEIN PRENYLTRANSFERASE ALPHA SUBUNIT REPEAT-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam PPTA UniProtKB/TrEMBL
PROSITE PFTA UniProtKB/TrEMBL
Superfamily-SCOP Protein prenylyltransferase UniProtKB/TrEMBL
UniProt A0A0D9R7T0 ENTREZGENE, UniProtKB/TrEMBL