EDIL3 (EGF like repeats and discoidin domains 3) - Rat Genome Database

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Gene: EDIL3 (EGF like repeats and discoidin domains 3) Chlorocebus sabaeus
Analyze
Symbol: EDIL3
Name: EGF like repeats and discoidin domains 3
RGD ID: 18429562
Description: ENCODES a protein that exhibits calcium ion binding (inferred); signaling receptor activity (inferred); INVOLVED IN positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); osteoarthritis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EGF-like repeat and discoidin I-like domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1478,047,780 - 78,491,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl478,047,503 - 78,491,075 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604926,961,846 - 27,416,666 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
EDIL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1478,047,780 - 78,491,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl478,047,503 - 78,491,075 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604926,961,846 - 27,416,666 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
EDIL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38583,940,554 - 84,384,880 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl583,940,554 - 84,384,880 (-)EnsemblGRCh38hg38GRCh38
GRCh37583,236,373 - 83,680,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36583,273,882 - 83,716,367 (-)NCBINCBI36Build 36hg18NCBI36
Build 34583,273,881 - 83,716,367NCBI
Celera579,143,254 - 79,585,747 (-)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef578,443,483 - 78,887,547 (-)NCBIHuRef
CHM1_1582,669,378 - 83,113,659 (-)NCBICHM1_1
T2T-CHM13v2.0584,429,063 - 84,873,508 (-)NCBIT2T-CHM13v2.0
Edil3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391388,969,591 - 89,471,344 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1388,969,591 - 89,471,342 (+)EnsemblGRCm39 Ensembl
GRCm381388,821,472 - 89,323,225 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1388,821,472 - 89,323,223 (+)EnsemblGRCm38mm10GRCm38
MGSCv371388,961,077 - 89,462,830 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361389,295,717 - 89,797,065 (+)NCBIMGSCv36mm8
Celera1392,422,307 - 92,915,061 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1345.3NCBI
Edil3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8221,625,604 - 22,140,380 (+)NCBIGRCr8
mRatBN7.2219,890,396 - 20,405,028 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl219,890,373 - 20,405,008 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0217,616,116 - 18,128,514 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl217,616,401 - 18,128,512 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0217,491,420 - 18,004,418 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4219,057,636 - 19,346,196 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera216,040,531 - 16,554,059 (+)NCBICelera
Cytogenetic Map2q12NCBI
Edil3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541826,391,299 - 26,680,553 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541826,391,309 - 26,680,553 (+)NCBIChiLan1.0ChiLan1.0
EDIL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2430,916,371 - 31,358,586 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1529,069,996 - 29,512,211 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0530,895,036 - 31,337,176 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1531,215,261 - 31,657,076 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl531,215,260 - 31,654,250 (+)Ensemblpanpan1.1panPan2
EDIL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1323,417,889 - 23,811,270 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl323,417,835 - 23,808,538 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha324,656,031 - 25,049,581 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0323,317,370 - 23,710,657 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl323,317,283 - 23,710,644 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1323,275,472 - 23,668,218 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0323,247,538 - 23,640,459 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0323,534,804 - 23,928,011 (+)NCBIUU_Cfam_GSD_1.0
Edil3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213179,234,376 - 179,627,376 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364692,996,348 - 3,391,721 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364692,998,424 - 3,391,386 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EDIL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl292,123,345 - 92,554,191 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1292,122,495 - 92,554,351 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2294,207,480 - 94,655,178 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Edil3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247434,057,687 - 4,481,888 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247434,059,274 - 4,481,999 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 1 40
Low 34 9 20
Below cutoff 1 9

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000012923   ⟹   ENSCSAP00000010941
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl478,047,503 - 78,491,075 (-)Ensembl
RefSeq Acc Id: XM_007977476   ⟹   XP_007975667
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1478,047,780 - 78,491,217 (-)NCBI
Vero_WHO_p1.0NW_02366604926,961,846 - 27,416,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007977484   ⟹   XP_007975675
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1478,047,780 - 78,491,217 (-)NCBI
Vero_WHO_p1.0NW_02366604926,961,846 - 27,416,440 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007975667 (Get FASTA)   NCBI Sequence Viewer  
  XP_007975675 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010941
  ENSCSAP00000010941.1
Reference Protein Sequences
RefSeq Acc Id: XP_007975675   ⟸   XM_007977484
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007975667   ⟸   XM_007977476
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RQQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010941   ⟸   ENSCSAT00000012923


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014835 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012923.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_CS UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
KEGG Report csab:103224169 UniProtKB/TrEMBL
NCBI Gene EDIL3 ENTREZGENE
PANTHER EGF-LIKE REPEAT AND DISCOIDIN I-LIKE DOMAIN-CONTAINING PROTEIN 3 PRECURSOR UniProtKB/TrEMBL
  F5/8 TYPE C DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam EGF UniProtKB/TrEMBL
  F5_F8_type_C UniProtKB/TrEMBL
  hEGF UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  FA58C_1 UniProtKB/TrEMBL
  FA58C_2 UniProtKB/TrEMBL
  FA58C_3 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
UniProt A0A0D9RQQ2 ENTREZGENE, UniProtKB/TrEMBL