RNF185 (ring finger protein 185) - Rat Genome Database

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Gene: RNF185 (ring finger protein 185) Chlorocebus sabaeus
Analyze
Symbol: RNF185
Name: ring finger protein 185
RGD ID: 18428024
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin binding (ortholog); INVOLVED IN defense response to virus (ortholog); ERAD pathway (ortholog); positive regulation of ERAD pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF185
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11914,050,271 - 14,095,819 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1914,076,113 - 14,093,410 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045112,021,366 - 112,068,433 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RNF185
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11914,050,271 - 14,095,819 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1914,076,113 - 14,093,410 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045112,021,366 - 112,068,433 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RNF185
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,160,182 - 31,207,019 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,160,182 - 31,207,019 (+)EnsemblGRCh38hg38GRCh38
GRCh372231,556,168 - 31,603,005 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362229,886,179 - 29,933,000 (+)NCBINCBI36Build 36hg18NCBI36
Celera2215,356,214 - 15,403,106 (+)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2214,517,777 - 14,564,817 (+)NCBIHuRef
CHM1_12231,515,988 - 31,562,845 (+)NCBICHM1_1
T2T-CHM13v2.02231,623,670 - 31,670,571 (+)NCBIT2T-CHM13v2.0
Rnf185
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,365,973 - 3,402,956 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,365,982 - 3,402,363 (-)EnsemblGRCm39 Ensembl
GRCm38113,415,973 - 3,452,956 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,415,982 - 3,452,363 (-)EnsemblGRCm38mm10GRCm38
MGSCv37113,315,986 - 3,352,328 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,315,986 - 3,352,328 (-)NCBIMGSCv36mm8
Celera113,906,097 - 3,942,520 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.4NCBI
Rnf185
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81482,516,153 - 82,554,199 (-)NCBIGRCr8
mRatBN7.21478,292,517 - 78,329,832 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1478,292,516 - 78,329,864 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1482,733,515 - 82,771,012 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01483,973,618 - 84,011,123 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,419,375 - 80,456,882 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01483,648,400 - 83,685,273 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1483,648,402 - 83,685,273 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01484,336,667 - 84,373,469 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41484,043,727 - 84,081,442 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1477,205,739 - 77,243,010 (-)NCBICelera
Cytogenetic Map14q21NCBI
Rnf185
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554555,351,488 - 5,395,026 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554555,351,530 - 5,394,615 (+)NCBIChiLan1.0ChiLan1.0
RNF185
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22341,115,374 - 41,162,146 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12243,813,920 - 43,860,689 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02212,183,591 - 12,230,371 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12230,020,353 - 30,066,266 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2230,020,353 - 30,066,266 (+)Ensemblpanpan1.1panPan2
RNF185
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12624,146,172 - 24,177,747 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2624,146,005 - 24,240,653 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2624,016,013 - 24,048,667 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02624,528,662 - 24,562,031 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2624,527,922 - 24,624,066 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12624,232,140 - 24,265,067 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02624,494,085 - 24,527,022 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02624,555,332 - 24,588,724 (+)NCBIUU_Cfam_GSD_1.0
Rnf185
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118117,074,118 - 117,110,063 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936755331,619 - 367,533 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936755331,658 - 367,604 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIMK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1447,951,481 - 47,979,699 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11447,946,370 - 47,979,702 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21451,057,248 - 51,090,590 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rnf185
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247477,641,916 - 7,694,033 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247477,642,198 - 7,693,944 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 15 60
Low 5
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000006830   ⟹   ENSCSAP00000005024
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1914,076,113 - 14,093,410 (+)Ensembl
RefSeq Acc Id: XM_007975453   ⟹   XP_007973644
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11914,050,271 - 14,095,819 (+)NCBI
Vero_WHO_p1.0NW_023666045112,021,366 - 112,068,433 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975455   ⟹   XP_007973646
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11914,073,929 - 14,095,819 (+)NCBI
Vero_WHO_p1.0NW_023666045112,021,366 - 112,043,157 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975456   ⟹   XP_007973647
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11914,068,304 - 14,095,819 (+)NCBI
Vero_WHO_p1.0NW_023666045112,021,366 - 112,048,284 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038007591   ⟹   XP_037863519
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045112,021,366 - 112,068,397 (-)NCBI
RefSeq Acc Id: XR_005243520
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045112,021,366 - 112,068,412 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007973644 (Get FASTA)   NCBI Sequence Viewer  
  XP_007973646 (Get FASTA)   NCBI Sequence Viewer  
  XP_007973647 (Get FASTA)   NCBI Sequence Viewer  
  XP_037863519 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005024.1
RefSeq Acc Id: XP_007973644   ⟸   XM_007975453
- UniProtKB: A0A0D9R8T5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007973647   ⟸   XM_007975456
- UniProtKB: A0A0D9R8T5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007973646   ⟸   XM_007975455
- UniProtKB: A0A0D9R8T5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000005024   ⟸   ENSCSAT00000006830
RefSeq Acc Id: XP_037863519   ⟸   XM_038007591
- UniProtKB: A0A0D9R8T5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008775 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006830.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro RNF5/RNF185-like UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report csab:103223183 UniProtKB/TrEMBL
NCBI Gene RNF185 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF185 UniProtKB/TrEMBL
  PTHR12313 UniProtKB/TrEMBL
Pfam zf-C3HC4 UniProtKB/TrEMBL
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A0D9R8T5 ENTREZGENE, UniProtKB/TrEMBL