LOC103226510 (uncharacterized LOC103226510) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC103226510 (uncharacterized LOC103226510) Chlorocebus sabaeus
Analyze
Symbol: LOC103226510 (Ensembl: DLX5)
Name: uncharacterized LOC103226510 (Ensembl:distal-less homeobox 5)
RGD ID: 18417397
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); HMG box domain binding (ortholog); INVOLVED IN anatomical structure formation involved in morphogenesis (ortholog); axon guidance (ortholog); axonogenesis (ortholog); ASSOCIATED WITH split hand-foot malformation 1 (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: distal-less homeobox 5; DLX5; homeobox protein DLX-5
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12152,032,933 - 52,092,791 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2152,036,401 - 52,040,903 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604252,268,203 - 52,315,364 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO)
cytoplasm  (ISO)
nucleus  (ISO)

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 16 12 54
Below cutoff 20 5 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007982093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005242422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005242423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005242424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000011114   ⟹   ENSCSAP00000009196
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2152,036,401 - 52,040,903 (+)Ensembl
RefSeq Acc Id: XR_005242422
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604252,268,203 - 52,315,364 (-)NCBI
RefSeq Acc Id: XR_005242423
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604252,268,203 - 52,315,364 (-)NCBI
RefSeq Acc Id: XR_005242424
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604252,268,203 - 52,308,854 (-)NCBI
RefSeq Acc Id: XR_494875
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12152,082,069 - 52,092,791 (+)NCBI
Vero_WHO_p1.0NW_02366604252,268,203 - 52,282,445 (-)NCBI
Sequence:
RefSeq Acc Id: XR_494878
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12152,054,794 - 52,092,791 (+)NCBI
Vero_WHO_p1.0NW_02366604252,268,203 - 52,309,683 (-)NCBI
Sequence:
RefSeq Acc Id: XR_494882
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12152,054,791 - 52,092,791 (+)NCBI
Vero_WHO_p1.0NW_02366604252,268,203 - 52,309,689 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013019 Ensembl, ENTREZGENE
NCBI Gene DLX5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103226510  uncharacterized LOC103226510  DLX5  distal-less homeobox 5  Symbol and/or name change 5135510 APPROVED