CHRM4 (cholinergic receptor muscarinic 4) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CHRM4 (cholinergic receptor muscarinic 4) Chlorocebus sabaeus
Analyze
Symbol: CHRM4
Name: cholinergic receptor muscarinic 4
RGD ID: 18416023
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptors engaging G alphai protein family; G protein mediated signaling pathway via Galphai family; ASSOCIATED WITH Catatonia (ortholog); congenital disorder of glycosylation type IIc (ortholog); congestive heart failure (ortholog); FOUND IN asymmetric synapse (ortholog); axon terminus (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: muscarinic acetylcholine receptor M4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,937,455 - 18,945,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,942,643 - 18,944,079 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038116,222,834 - 116,230,831 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CHRM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,937,455 - 18,945,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,942,643 - 18,944,079 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038116,222,834 - 116,230,831 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CHRM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381146,383,789 - 46,391,776 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1146,383,789 - 46,391,776 (-)EnsemblGRCh38hg38GRCh38
GRCh371146,405,339 - 46,413,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361146,363,216 - 46,364,683 (-)NCBINCBI36Build 36hg18NCBI36
Build 341146,363,215 - 46,364,683NCBI
Celera1146,554,217 - 46,555,684 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1146,113,598 - 46,115,064 (-)NCBIHuRef
CHM1_11146,405,093 - 46,406,560 (-)NCBICHM1_1
T2T-CHM13v2.01146,539,864 - 46,547,851 (-)NCBIT2T-CHM13v2.0
Chrm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,752,531 - 91,760,180 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,757,594 - 91,759,033 (+)EnsemblGRCm39 Ensembl
GRCm38291,922,189 - 91,929,835 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,927,249 - 91,928,688 (+)EnsemblGRCm38mm10GRCm38
MGSCv37291,762,346 - 91,769,986 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36291,728,088 - 91,729,527 (+)NCBIMGSCv36mm8
Celera293,312,590 - 93,320,231 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.63NCBI
Chrm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8398,349,080 - 98,356,821 (+)NCBIGRCr8
mRatBN7.2377,893,425 - 77,901,166 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,893,425 - 77,901,159 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx381,368,613 - 81,376,348 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0389,967,641 - 89,975,378 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0387,818,870 - 87,826,600 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0380,833,272 - 80,841,165 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl380,833,272 - 80,841,006 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0387,531,619 - 87,539,681 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4376,301,988 - 76,309,729 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1376,203,520 - 76,206,094 (+)NCBI
Celera377,096,073 - 77,103,815 (+)NCBICelera
Cytogenetic Map3q24NCBI
Chrm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554221,647,663 - 1,655,363 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554221,647,663 - 1,655,363 (+)NCBIChiLan1.0ChiLan1.0
CHRM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2948,596,916 - 48,606,737 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,603,743 - 48,611,729 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01146,342,384 - 46,350,366 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,893,292 - 46,901,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,894,615 - 46,896,054 (-)Ensemblpanpan1.1panPan2
CHRM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11843,077,115 - 43,084,298 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1843,082,404 - 43,083,840 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1841,805,766 - 41,813,475 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01843,733,324 - 43,740,846 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1843,733,289 - 43,741,042 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11843,218,330 - 43,226,035 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01842,770,212 - 42,777,904 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01843,503,419 - 43,510,935 (+)NCBIUU_Cfam_GSD_1.0
Chrm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494720,567,540 - 20,576,257 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365622,493,774 - 2,689,731 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365622,685,209 - 2,687,751 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHRM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl216,122,704 - 16,130,810 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1216,119,794 - 16,131,080 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2217,468,644 - 17,476,868 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Chrm4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247672,162,712 - 2,171,012 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247672,162,719 - 2,170,921 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20
Low 20 10 40
Below cutoff 15 7

Sequence


RefSeq Acc Id: ENSCSAT00000019300   ⟹   ENSCSAP00000018720
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl118,942,643 - 18,944,079 (+)Ensembl
RefSeq Acc Id: XM_008000215   ⟹   XP_007998406
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1118,937,456 - 18,945,390 (+)NCBI
Vero_WHO_p1.0NW_023666038116,222,834 - 116,230,831 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000222   ⟹   XP_007998413
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1118,937,455 - 18,945,390 (+)NCBI
Vero_WHO_p1.0NW_023666038116,222,834 - 116,230,831 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007998406 (Get FASTA)   NCBI Sequence Viewer  
  XP_007998413 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018720
  ENSCSAP00000018720.1
RefSeq Acc Id: XP_007998413   ⟸   XM_008000222
- UniProtKB: A0A0D9SCY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998406   ⟸   XM_008000215
- UniProtKB: A0A0D9SCY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018720   ⟸   ENSCSAT00000019300


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019210 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019300.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Musac_Ach_M4_rcpt UniProtKB/TrEMBL
  Musac_Ach_rcpt UniProtKB/TrEMBL
KEGG Report csab:103236497 UniProtKB/TrEMBL
NCBI Gene CHRM4 ENTREZGENE
PANTHER 5-HYDROXYTRYPTAMINE RECEPTOR UniProtKB/TrEMBL
  MUSCARINIC ACETYLCHOLINE RECEPTOR M4 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  MUSCARINICR UniProtKB/TrEMBL
  MUSCRINICM4R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0D9SCY1 ENTREZGENE, UniProtKB/TrEMBL