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Gene: YBX3 (Y-box binding protein 3) Chlorocebus sabaeus

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Symbol:

YBX3

Name:

Y-box binding protein 3

RGD ID:

18414555

Description:

ENCODES a protein that exhibits single-stranded DNA binding (ortholog); small GTPase binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Optic Nerve Injuries (ortholog); FOUND IN bicellular tight junction (ortholog); gap junction (ortholog); perinuclear region of cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Y-box-binding protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	YBX3 (Y-box binding protein 3)	NCBI	Ortholog
Mus musculus (house mouse):	Ybx3 (Y box protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ybx3 (Y box binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ybx3 (Y-box binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	YBX3 (Y-box binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	YBX3 (Y-box binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	YBX3 (Y-box binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	10,498,162 - 10,522,432 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	10,500,361 - 10,522,226 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666089	2,576,328 - 2,600,838 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Optic Nerve Injuries (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

animal organ regeneration (ISO)

apoptotic process (IEA)

cellular hyperosmotic response (IEA)

cellular response to tumor necrosis factor (IEA)

ectopic germ cell programmed cell death (IEA)

fertilization (IEA)

in utero embryonic development (IEA)

male gonad development (IEA)

negative regulation of apoptotic process (IEA)

negative regulation of developmental process (IEA)

negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (ISO)

negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress (IEA)

negative regulation of necroptotic process (IEA)

negative regulation of reproductive process (IEA)

negative regulation of skeletal muscle tissue development (IEA)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

positive regulation of cytoplasmic translation (ISO)

positive regulation of organ growth (IEA)

spermatogenesis (IEA,ISO)

Cellular Component

bicellular tight junction (ISO)

cytoplasm (IEA)

cytosol (IEA)

gap junction (ISO)

nucleus (IEA)

perinuclear region of cytoplasm (ISO)

synapse (IEA)

Molecular Function

DNA binding (IEA)

mRNA 3'-UTR binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

ribonucleoprotein complex binding (IEA)

RNA binding (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

single-stranded DNA binding (ISO)

small GTPase binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

YBX3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	10,498,162 - 10,522,432 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	10,500,361 - 10,522,226 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666089	2,576,328 - 2,600,838 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

YBX3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	10,699,089 - 10,723,323 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	10,699,089 - 10,723,323 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	10,851,688 - 10,875,922 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	10,742,955 - 10,767,171 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	10,742,955 - 10,767,171	NCBI
Celera	12	16,000,000 - 16,024,276 (-)	NCBI		Celera
Cytogenetic Map	12	p13.2	NCBI
HuRef	12	10,580,443 - 10,604,713 (-)	NCBI		HuRef
CHM1_1	12	10,821,053 - 10,845,329 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	10,572,193 - 10,596,426 (-)	NCBI		T2T-CHM13v2.0

Ybx3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	131,341,821 - 131,365,413 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	131,341,818 - 131,365,439 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	131,364,858 - 131,388,450 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	131,364,855 - 131,388,476 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	131,314,876 - 131,338,468 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	131,330,551 - 131,354,143 (-)	NCBI		MGSCv36	mm8
Celera	6	136,414,596 - 136,438,226 (-)	NCBI		Celera
Cytogenetic Map	6	F3	NCBI
cM Map	6	63.44	NCBI

Ybx3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	166,861,180 - 166,884,532 (-)	NCBI		GRCr8
mRatBN7.2	4	165,129,747 - 165,153,101 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	165,129,758 - 165,153,161 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	171,414,533 - 171,437,843 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	167,197,552 - 167,220,862 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	165,831,596 - 165,854,906 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	165,606,819 - 165,630,041 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	165,606,819 - 165,630,118 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	228,170,272 - 228,193,525 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	169,076,517 - 169,099,849 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	169,321,476 - 169,344,762 (-)	NCBI
Celera	4	153,733,515 - 153,756,519 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

Ybx3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	7,089,719 - 7,108,473 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	7,090,085 - 7,111,542 (+)	NCBI	ChiLan1.0	ChiLan1.0

YBX3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	16,170,908 - 16,195,183 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	16,167,659 - 16,191,821 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	10,728,049 - 10,752,267 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	10,994,177 - 11,018,504 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	10,996,380 - 11,018,172 (-)	Ensembl	panpan1.1		panPan2

YBX3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	35,043,756 - 35,066,230 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	35,043,699 - 35,066,227 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	11,465,924 - 11,493,283 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	35,383,798 - 35,411,218 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	35,383,839 - 35,411,207 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	35,266,703 - 35,294,044 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	35,211,037 - 35,238,385 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	11,081,610 - 11,108,979 (-)	NCBI		UU_Cfam_GSD_1.0

YBX3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	61,337,862 - 61,361,279 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	61,337,868 - 61,361,269 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	64,060,833 - 64,084,239 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Variants

Variants in YBX3
538 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007967645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007967646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007967647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037995140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037995141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037995143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037995144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037995145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000006756 ⟹ ENSCSAP00000004954

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	11	10,500,361 - 10,522,226 (-)	Ensembl

RefSeq Acc Id:

XM_007967645 ⟹ XP_007965836

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	11	10,498,162 - 10,522,432 (-)	NCBI
Vero_WHO_p1.0	NW_023666089	2,576,328 - 2,600,838 (-)	NCBI

Sequence:

show sequence

ATCGAGCGAGGAGCCCAAGAGCGAGCGCGCAGCCCAAAGCTCGAGCCGCCTCCGCCGCGCGACC
CCACCTCGGCCGCCGCCGCCTGCGCCGCGAGATCCGCCCCGGCCTCCCCGAGAGCGAGCCCGGG
CCGCCGCGACCACCAGCCGCGCTAACCGCCGACCAACCGCCACCGAGGCGCCTGAGCGAGAGCA
GAGGAGGAGGAGGCATGAGCGAGGCGGGCGAGGCCACCACCACCACCACCACCACCACCCTCCC
GCAGGCTCCGACGGAGGCGGCCGCCGCGGCTCCCCAGGACCCCGCGCCCAAGAGCCCGGTGGGC
AGCGGTGCGCCCCAGGCCGCGGCCCCGGCGCCCGCCGCCCACGTCGCAGGAAACCCGGGTGGGG
ACGCGGCCCCCGCAGCCACGGGTACCGCGGCCGCCGCCTCTTTAGCCACCGCCGCCGGCAGTGA
AGACGCGGAGAAAAAAGTTCTCGCCACCAAAGTCCTTGGCACTGTCAAATGGTTCAACGTCAGA
AATGGATATGGATTTATAAATCGAAATGACACCAAAGAAGATGTATTTGTACATCAGACTGCCA
TCAAGAAGAATAACCCACGGAAATATCTGCGCAGTGTAGGAGATGGAGAAACTGTAGAGTTTGA
TGTGGTTGAAGGAGAGAAGGGTGCAGAAGCTGCCAATGTGACTGGCCCGGATGGAGTTCCTGTG
GAAGGGAGTCGTTACGCTGCTGATCGGCGCCGTTACAGACGTGGCTACTATGGAAGGCGCCGTG
GCCCTCCCCGGAATTACGCTGGGGAGGAGGAGGAGGAAGGGAGCGGCAGCAGTGAAGGATTTGA
CCCCCCTGCCACTGATAGGCAGTTCTCTGGGGCCCGGAATCAGCTGCGCCGCCCCCAATATCGC
CCTCAGTACCGGCAGCGGCGGTTCCCGCCTTACCACGTGGGACAGACCTTTGACCGTCGCTCAC
GGGTCTTACCCCATCCCAACAGAATACAGGCTGGTGAGATTGGAGAGATGAAGGATGGAGTCCC
AGAGGGAGCACAACTTCAGGGACCGGTTCATCGAAATCCAACTTACCGCCCAAGGTACCGTAGC
AGAGGACCTCCTCGCCCACGACCTGCCCCAGCAGTTGGAGAGGCTGAAGATAAAGAAAATCAGC
AAGCCTCCAGTGGTCCAAACCAGCCGTCAGTTCGCCGTGGATACCGGCGTCCCTACAATTACCG
ACGTCGCCCGCGTCTTCCTAACGCTCCTTCACAAGATGGCAAAGAGGCCAAGGCAGGTGAAGCA
CCAACTGAGAACCCCGCTCCACCCACCCAGCAGAGCAGTGCTGAGTAACACCAGGCTCCCCAGG
CACCTTCACCATCGGCAGGGTGACCTAAAGAATTAGTGACCATTCAGAAATAAAGCAAAAAGCA
GGCCACAACCTTACCAACACCAAAGAAACATTCAAGCAATAAAGTGGAAGACAAACCAAGATTT
GGACATTGGAATGTTTACTGTTATTCTTGAAGAAACAACTACAAAAAGAAAATGTCAACAAATT
TTTCCAGCAAGCTGAGAACCTGGGAATTCCTGCACAGAAGACAAGAGAGCAGCCTCCCCAGTTT
CAGCGACCGCTAGGTTTATATTTTTTTTCCTGGTTTTTACTGTTTTGGTAATATATATATTGAA
ACAAGAAATATTAATACCGCATGGGGAGAACCCCAACCAAAGAAATCTGAAATATATAGTAAAT
GCTTTTTTTTCCGTTTTTGTTCATTTTGGATGCTGGTGCTAAACCTCCAAGTGTCATGATTTAA
AAAAAAAATAATTTATGTCCTTATTTATTTCTAGAATGAGGGGAGGATAACATTTTTGCTTTCT
TATGTGACTCTCTTTGAAAATGTGCAGTAAGAAGTTCCTCAAAAATAAAATTTTTACCCTTCAA
AGGACAAAA

hide sequence

RefSeq Acc Id:

XM_007967646 ⟹ XP_007965837

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	11	10,498,162 - 10,522,318 (-)	NCBI
Vero_WHO_p1.0	NW_023666089	2,576,328 - 2,600,838 (-)	NCBI

Sequence:

show sequence

AGAGCGAGCCCGGGCCGCCGCGACCACCAGCCGCGCTAACCGCCGACCAACCGCCACCGAGGCG
CCTGAGCGAGAGCAGAGGAGGAGGAGGCATGAGCGAGGCGGGCGAGGCCACCACCACCACCACC
ACCACCACCCTCCCGCAGGCTCCGACGGAGGCGGCCGCCGCGGCTCCCCAGGACCCCGCGCCCA
AGAGCCCGGTGGGCAGCGGTGCGCCCCAGGCCGCGGCCCCGGCGCCCGCCGCCCACGTCGCAGG
AAACCCGGGTGGGGACGCGGCCCCCGCAGCCACGGGTACCGCGGCCGCCGCCTCTTTAGCCACC
GCCGCCGGCAGTGAAGACGCGGAGAAAAAAGTTCTCGCCACCAAAGTCCTTGGCACTGTCAAAT
GGTTCAACGTCAGAAATGGATATGGATTTATAAATCGAAATGACACCAAAGAAGATGTATTTGT
ACATCAGACTGCCATCAAGAAGAATAACCCACGGAAATATCTGCGCAGTGTAGGAGATGGAGAA
ACTGTAGAGTTTGATGTGGTTGAAGGAGAGAAGGGTGCAGAAGCTGCCAATGTGACTGGCCCGG
ATGGAGTTCCTGTGGAAGGGAGTCGTTACGCTGCTGATCGGCGCCGTTACAGACGTGGCTACTA
TGGAAGGCGCCGTGGCCCTCCCCGGAATTACGCTGGGGAGGAGGAGGAGGAAGGGAGCGGCAGC
AGTGAAGGATTTGACCCCCCTGCCACTGATAGGCAGTTCTCTGGGGCCCGGAATCAGCTGCGCC
GCCCCCAATATCGCCCTCAGTACCGGCAGCGGCGGTTCCCGCCTTACCACGTGGGACAGACCTT
TGACCGTCGCTCACGGGTCTTACCCCATCCCAACAGAATACAGGCTGGTGAGATTGGAGAGATG
AAGGATGGAGTCCCAGAGGGAGCACAACTTCAGGGACCGGTTCATCGAAATCCAACTTACCGCC
CAAGGTACCGTAGAGGACCTCCTCGCCCACGACCTGCCCCAGCAGTTGGAGAGGCTGAAGATAA
AGAAAATCAGCAAGCCTCCAGTGGTCCAAACCAGCCGTCAGTTCGCCGTGGATACCGGCGTCCC
TACAATTACCGACGTCGCCCGCGTCTTCCTAACGCTCCTTCACAAGATGGCAAAGAGGCCAAGG
CAGGTGAAGCACCAACTGAGAACCCCGCTCCACCCACCCAGCAGAGCAGTGCTGAGTAACACCA
GGCTCCCCAGGCACCTTCACCATCGGCAGGGTGACCTAAAGAATTAGTGACCATTCAGAAATAA
AGCAAAAAGCAGGCCACAACCTTACCAACACCAAAGAAACATTCAAGCAATAAAGTGGAAGACA
AACCAAGATTTGGACATTGGAATGTTTACTGTTATTCTTGAAGAAACAACTACAAAAAGAAAAT
GTCAACAAATTTTTCCAGCAAGCTGAGAACCTGGGAATTCCTGCACAGAAGACAAGAGAGCAGC
CTCCCCAGTTTCAGCGACCGCTAGGTTTATATTTTTTTTCCTGGTTTTTACTGTTTTGGTAATA
TATATATTGAAACAAGAAATATTAATACCGCATGGGGAGAACCCCAACCAAAGAAATCTGAAAT
ATATAGTAAATGCTTTTTTTTCCGTTTTTGTTCATTTTGGATGCTGGTGCTAAACCTCCAAGTG
TCATGATTTAAAAAAAAAATAATTTATGTCCTTATTTATTTCTAGAATGAGGGGAGGATAACAT
TTTTGCTTTCTTATGTGACTCTCTTTGAAAATGTGCAGTAAGAAGTTCCTCAAAAATAAAATTT
TTACCCTTCAAAGGACAAAA

hide sequence

RefSeq Acc Id:

XM_007967647 ⟹ XP_007965838

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	11	10,498,162 - 10,522,318 (-)	NCBI
Vero_WHO_p1.0	NW_023666089	2,576,328 - 2,600,838 (-)	NCBI

Sequence:

show sequence

AGAGCGAGCCCGGGCCGCCGCGACCACCAGCCGCGCTAACCGCCGACCAACCGCCACCGAGGCG
CCTGAGCGAGAGCAGAGGAGGAGGAGGCATGAGCGAGGCGGGCGAGGCCACCACCACCACCACC
ACCACCACCCTCCCGCAGGCTCCGACGGAGGCGGCCGCCGCGGCTCCCCAGGACCCCGCGCCCA
AGAGCCCGGTGGGCAGCGGTGCGCCCCAGGCCGCGGCCCCGGCGCCCGCCGCCCACGTCGCAGG
AAACCCGGGTGGGGACGCGGCCCCCGCAGCCACGGGTACCGCGGCCGCCGCCTCTTTAGCCACC
GCCGCCGGCAGTGAAGACGCGGAGAAAAAAGTTCTCGCCACCAAAGTCCTTGGCACTGTCAAAT
GGTTCAACGTCAGAAATGGATATGGATTTATAAATCGAAATGACACCAAAGAAGATGTATTTGT
ACATCAGACTGCCATCAAGAAGAATAACCCACGGAAATATCTGCGCAGTGTAGGAGATGGAGAA
ACTGTAGAGTTTGATGTGGTTGAAGGAGAGAAGGGTGCAGAAGCTGCCAATGTGACTGGCCCGG
ATGGAGTTCCTGTGGAAGGGAGTCGTTACGCTGCTGATCGGCGCCGTTACAGACGTGGCTACTA
TGGAAGGCGCCGTGGCCCTCCCCGGAATGCTGGTGAGATTGGAGAGATGAAGGATGGAGTCCCA
GAGGGAGCACAACTTCAGGGACCGGTTCATCGAAATCCAACTTACCGCCCAAGGTACCGTAGCA
GAGGACCTCCTCGCCCACGACCTGCCCCAGCAGTTGGAGAGGCTGAAGATAAAGAAAATCAGCA
AGCCTCCAGTGGTCCAAACCAGCCGTCAGTTCGCCGTGGATACCGGCGTCCCTACAATTACCGA
CGTCGCCCGCGTCTTCCTAACGCTCCTTCACAAGATGGCAAAGAGGCCAAGGCAGGTGAAGCAC
CAACTGAGAACCCCGCTCCACCCACCCAGCAGAGCAGTGCTGAGTAACACCAGGCTCCCCAGGC
ACCTTCACCATCGGCAGGGTGACCTAAAGAATTAGTGACCATTCAGAAATAAAGCAAAAAGCAG
GCCACAACCTTACCAACACCAAAGAAACATTCAAGCAATAAAGTGGAAGACAAACCAAGATTTG
GACATTGGAATGTTTACTGTTATTCTTGAAGAAACAACTACAAAAAGAAAATGTCAACAAATTT
TTCCAGCAAGCTGAGAACCTGGGAATTCCTGCACAGAAGACAAGAGAGCAGCCTCCCCAGTTTC
AGCGACCGCTAGGTTTATATTTTTTTTCCTGGTTTTTACTGTTTTGGTAATATATATATTGAAA
CAAGAAATATTAATACCGCATGGGGAGAACCCCAACCAAAGAAATCTGAAATATATAGTAAATG
CTTTTTTTTCCGTTTTTGTTCATTTTGGATGCTGGTGCTAAACCTCCAAGTGTCATGATTTAAA
AAAAAAATAATTTATGTCCTTATTTATTTCTAGAATGAGGGGAGGATAACATTTTTGCTTTCTT
ATGTGACTCTCTTTGAAAATGTGCAGTAAGAAGTTCCTCAAAAATAAAATTTTTACCCTTCAAA
GGACAAAA

hide sequence

RefSeq Acc Id:

XM_037995140 ⟹ XP_037851068

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666089	2,576,328 - 2,600,838 (-)	NCBI

RefSeq Acc Id:

XM_037995141 ⟹ XP_037851069

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666089	2,576,328 - 2,600,838 (-)	NCBI

RefSeq Acc Id:

XM_037995143 ⟹ XP_037851071

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666089	2,576,328 - 2,600,838 (-)	NCBI

RefSeq Acc Id:

XM_037995144 ⟹ XP_037851072

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666089	2,576,328 - 2,600,838 (-)	NCBI

RefSeq Acc Id:

XM_037995145 ⟹ XP_037851073

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666089	2,576,328 - 2,600,838 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007965836	(Get FASTA)	NCBI Sequence Viewer
	XP_007965837	(Get FASTA)	NCBI Sequence Viewer
	XP_007965838	(Get FASTA)	NCBI Sequence Viewer
	XP_037851068	(Get FASTA)	NCBI Sequence Viewer
	XP_037851069	(Get FASTA)	NCBI Sequence Viewer
	XP_037851071	(Get FASTA)	NCBI Sequence Viewer
	XP_037851072	(Get FASTA)	NCBI Sequence Viewer
	XP_037851073	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000004954
	ENSCSAP00000004954.1

RefSeq Acc Id:	XP_007965836 ⟸ XM_007967645
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9R8L5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007965838 ⟸ XM_007967647
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_007965837 ⟸ XM_007967646
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSCSAP00000004954 ⟸ ENSCSAT00000006756

RefSeq Acc Id:	XP_037851073 ⟸ XM_037995145
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_037851072 ⟸ XM_037995144
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_037851071 ⟸ XM_037995143
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_037851069 ⟸ XM_037995141
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_037851068 ⟸ XM_037995140
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000008744	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000006756.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.140	UniProtKB/TrEMBL
InterPro	Cold_shock_domain	UniProtKB/TrEMBL
	CSD	UniProtKB/TrEMBL
	CSD_1	UniProtKB/TrEMBL
	CSP_DNA-bd	UniProtKB/TrEMBL
	NA-bd_OB-fold	UniProtKB/TrEMBL
KEGG Report	csab:103218591	UniProtKB/TrEMBL
NCBI Gene	YBX3	ENTREZGENE
PANTHER	COLD SHOCK DOMAIN CONTAINING PROTEINS	UniProtKB/TrEMBL
Pfam	CSD	UniProtKB/TrEMBL
PRINTS	COLDSHOCK	UniProtKB/TrEMBL
PROSITE	CSD_1	UniProtKB/TrEMBL
	CSD_2	UniProtKB/TrEMBL
SMART	CSP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50249	UniProtKB/TrEMBL
UniProt	A0A0D9R8L5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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