ST8SIA3 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ST8SIA3 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3) Chlorocebus sabaeus
Analyze
Symbol: ST8SIA3
Name: ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
RGD ID: 18414495
Description: ENCODES a protein that exhibits alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity (inferred); glycosyltransferase activity (inferred); identical protein binding (inferred); INVOLVED IN ganglioside biosynthetic process (inferred); glycoprotein metabolic process (inferred); N-glycan processing (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11822,367,725 - 22,378,567 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1822,369,107 - 22,376,818 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660603,190,818 - 3,202,859 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ST8SIA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11822,367,725 - 22,378,567 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1822,369,107 - 22,376,818 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660603,190,818 - 3,202,859 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ST8SIA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381857,352,557 - 57,368,931 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1857,352,557 - 57,371,731 (+)EnsemblGRCh38hg38GRCh38
GRCh371855,019,788 - 55,036,162 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361853,170,719 - 53,187,160 (+)NCBINCBI36Build 36hg18NCBI36
Celera1851,736,805 - 51,753,237 (+)NCBICelera
Cytogenetic Map18q21.31NCBI
HuRef1851,730,062 - 51,746,501 (+)NCBIHuRef
CHM1_11855,014,936 - 55,031,381 (+)NCBICHM1_1
T2T-CHM13v2.01857,553,442 - 57,569,818 (+)NCBIT2T-CHM13v2.0
St8sia3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391864,387,430 - 64,409,217 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1864,387,430 - 64,412,682 (+)EnsemblGRCm39 Ensembl
GRCm381864,254,359 - 64,276,146 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1864,254,359 - 64,279,611 (+)EnsemblGRCm38mm10GRCm38
MGSCv371864,414,013 - 64,435,798 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361864,390,757 - 64,401,513 (+)NCBIMGSCv36mm8
Celera1865,519,636 - 65,541,407 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1837.25NCBI
St8sia3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81860,024,555 - 60,031,050 (+)NCBIGRCr8
mRatBN7.21857,754,349 - 57,760,839 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1857,754,347 - 57,760,839 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1859,831,465 - 59,838,048 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01860,548,052 - 60,554,634 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01858,378,116 - 58,384,609 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01859,748,766 - 59,755,257 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1859,748,444 - 59,755,226 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01858,962,845 - 58,969,336 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41860,467,773 - 60,474,264 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11860,540,973 - 60,547,465 (+)NCBI
Celera1855,892,509 - 55,899,000 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
St8sia3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540241,713,573 - 41,723,749 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540241,713,969 - 41,732,889 (+)NCBIChiLan1.0ChiLan1.0
ST8SIA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21774,892,856 - 74,909,632 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11860,585,470 - 60,602,246 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01850,741,928 - 50,760,032 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11854,077,167 - 54,095,266 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1854,077,167 - 54,086,638 (+)Ensemblpanpan1.1panPan2
ST8SIA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1118,541,197 - 18,557,887 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl118,549,942 - 18,557,893 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha119,524,519 - 19,541,252 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0118,422,875 - 18,439,623 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl118,429,950 - 18,439,735 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1118,479,283 - 18,496,052 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0118,376,887 - 18,393,614 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0118,646,103 - 18,662,811 (-)NCBIUU_Cfam_GSD_1.0
St8sia3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494431,708,571 - 31,724,059 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364976,955,857 - 6,963,117 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364976,955,973 - 6,962,952 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST8SIA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1106,683,562 - 106,696,300 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11106,683,536 - 106,701,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21117,305,042 - 117,314,410 (-)NCBISscrofa10.2Sscrofa10.2susScr3
St8sia3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247922,881,068 - 2,888,943 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247922,881,545 - 2,897,891 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 60
Low 14 12
Below cutoff 2 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008013987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000016244   ⟹   ENSCSAP00000014164
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1822,369,107 - 22,376,818 (-)Ensembl
RefSeq Acc Id: XM_008013987   ⟹   XP_008012178
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11822,367,725 - 22,378,567 (-)NCBI
Vero_WHO_p1.0NW_0236660603,190,818 - 3,202,859 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008012178 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014164.1
RefSeq Acc Id: XP_008012178   ⟸   XM_008013987
- UniProtKB: A0A0D9RZX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000014164   ⟸   ENSCSAT00000016244


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018147 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016244.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
KEGG Report csab:103244224 UniProtKB/TrEMBL
NCBI Gene ST8SIA3 ENTREZGENE
PANTHER ALPHA-2,8-SIALYLTRANSFERASE UniProtKB/TrEMBL
  SIA-ALPHA-2,3-GAL-BETA-1,4-GLCNAC-R:ALPHA 2,8-SIALYLTRANSFERASE UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A0D9RZX5 ENTREZGENE, UniProtKB/TrEMBL