ETFB (electron transfer flavoprotein subunit beta) - Rat Genome Database

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Gene: ETFB (electron transfer flavoprotein subunit beta) Chlorocebus sabaeus
Analyze
Symbol: ETFB
Name: electron transfer flavoprotein subunit beta
RGD ID: 18412284
Description: ENCODES a protein that exhibits electron transfer activity (inferred); INVOLVED IN amino acid catabolic process (inferred); fatty acid beta-oxidation using acyl-CoA dehydrogenase (inferred); respiratory electron transport chain (inferred); PARTICIPATES IN fatty acid beta degradation pathway; ASSOCIATED WITH chronic kidney disease (ortholog); genetic disease (ortholog); multiple acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN electron transfer flavoprotein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: electron transfer flavoprotein beta subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1644,269,123 - 44,286,039 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl644,267,702 - 44,286,065 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607324,316,882 - 24,335,244 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ETFB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1644,269,123 - 44,286,039 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl644,267,702 - 44,286,065 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607324,316,882 - 24,335,244 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ETFB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381951,345,155 - 51,366,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1951,345,169 - 51,366,388 (-)EnsemblGRCh38hg38GRCh38
GRCh371951,848,409 - 51,869,642 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361956,540,221 - 56,561,484 (-)NCBINCBI36Build 36hg18NCBI36
Build 341956,540,236 - 56,561,418NCBI
Celera1948,900,014 - 48,920,754 (-)NCBICelera
Cytogenetic Map19q13.41NCBI
HuRef1948,180,363 - 48,201,646 (-)NCBIHuRef
CHM1_11951,850,304 - 51,871,634 (-)NCBICHM1_1
T2T-CHM13v2.01954,433,439 - 54,455,031 (-)NCBIT2T-CHM13v2.0
Etfb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39743,093,496 - 43,107,224 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl743,093,507 - 43,107,224 (+)EnsemblGRCm39 Ensembl
GRCm38743,444,072 - 43,457,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl743,444,083 - 43,457,800 (+)EnsemblGRCm38mm10GRCm38
MGSCv37750,699,513 - 50,713,152 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36743,312,063 - 43,325,702 (+)NCBIMGSCv36mm8
Celera738,910,808 - 38,926,231 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.25NCBI
Etfb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81102,988,499 - 103,002,663 (+)NCBIGRCr8
mRatBN7.2193,851,908 - 93,866,072 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl193,851,858 - 93,866,068 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx199,237,261 - 99,251,426 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01107,709,936 - 107,724,100 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01101,002,512 - 101,016,678 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0198,472,776 - 98,486,940 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl198,472,745 - 98,486,976 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0199,549,581 - 99,563,745 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4193,820,124 - 93,834,288 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1193,898,234 - 93,912,398 (+)NCBI
Celera188,129,019 - 88,143,212 (+)NCBICelera
Cytogenetic Map1q22NCBI
Etfb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555581,032,743 - 1,046,300 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555581,032,743 - 1,046,300 (+)NCBIChiLan1.0ChiLan1.0
ETFB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22057,383,360 - 57,403,748 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11959,304,795 - 59,325,233 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01948,281,101 - 48,301,527 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11957,166,787 - 57,187,130 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1957,166,829 - 57,175,582 (-)Ensemblpanpan1.1panPan2
ETFB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11105,612,791 - 105,628,125 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,185,495 - 105,200,846 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01106,122,338 - 106,137,692 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,121,287 - 106,137,669 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11105,793,985 - 105,809,566 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01105,434,826 - 105,450,168 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,230,376 - 106,245,728 (+)NCBIUU_Cfam_GSD_1.0
Etfb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934923,053,838 - 23,059,147 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493737823,268 - 33,276 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493737826,164 - 31,470 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETFB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl658,501,811 - 58,517,579 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1658,501,892 - 58,517,580 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,672,759 - 51,688,457 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Etfb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248323,505,511 - 3,518,870 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248323,506,140 - 3,518,760 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 41
Low 20 19
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007997770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000000046   ⟹   ENSCSAP00000016005
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl644,267,702 - 44,286,065 (-)Ensembl
RefSeq Acc Id: XM_007997770   ⟹   XP_007995961
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1644,269,123 - 44,286,039 (-)NCBI
Vero_WHO_p1.0NW_02366607324,316,882 - 24,335,244 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007995961 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016005
  ENSCSAP00000016005.1
Reference Protein Sequences
RefSeq Acc Id: XP_007995961   ⟸   XM_007997770
- UniProtKB: A0A0D9S566 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000016005   ⟸   ENSCSAT00000000046


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002029 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000046.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.620 UniProtKB/TrEMBL
InterPro ET-Flavoprotein_bsu_CS UniProtKB/TrEMBL
  ETF_a/b_N UniProtKB/TrEMBL
  ETF_b UniProtKB/TrEMBL
  ETF_beta_N UniProtKB/TrEMBL
  Rossmann-like_a/b/a_fold UniProtKB/TrEMBL
KEGG Report csab:103235126 UniProtKB/TrEMBL
NCBI Gene ETFB ENTREZGENE
PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT BETA UniProtKB/TrEMBL
  PTHR21294 UniProtKB/TrEMBL
Pfam ETF UniProtKB/TrEMBL
PIRSF Beta-ETF UniProtKB/TrEMBL
PROSITE ETF_BETA UniProtKB/TrEMBL
SMART ETF UniProtKB/TrEMBL
Superfamily-SCOP Adenine nucleotide alpha hydrolases-like UniProtKB/TrEMBL
UniProt A0A0D9S566 ENTREZGENE, UniProtKB/TrEMBL