LOC103221971 (histone H4) - Rat Genome Database

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Gene: LOC103221971 (histone H4) Chlorocebus sabaeus
Analyze
Symbol: LOC103221971 (Ensembl: H4-16)
Name: histone H4 (Ensembl:H4 histone 16)
RGD ID: 18411738
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); INVOLVED IN negative regulation of megakaryocyte differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Tessadori-van Haaften Neurodevelopmental Syndrome 4 (ortholog); FOUND IN CENP-A containing nucleosome (ortholog); nucleosome (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11745,370,125 - 45,370,754 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,670,283 - 14,670,591 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604426,834,357 - 26,834,758 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC103221971
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11745,370,125 - 45,370,754 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,670,283 - 14,670,591 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604426,834,357 - 26,834,758 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
H4C9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38627,139,282 - 27,139,678 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl627,139,282 - 27,139,678 (+)EnsemblGRCh38hg38GRCh38
GRCh37627,107,061 - 27,107,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36627,215,067 - 27,215,436 (+)NCBINCBI36Build 36hg18NCBI36
Build 34627,215,066 - 27,215,436NCBI
Celera628,713,087 - 28,713,456 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef626,915,149 - 26,915,518 (+)NCBIHuRef
CHM1_1627,109,410 - 27,109,779 (+)NCBICHM1_1
T2T-CHM13v2.0627,008,097 - 27,008,493 (+)NCBIT2T-CHM13v2.0
H4c9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391322,225,130 - 22,225,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1322,224,806 - 22,225,532 (-)EnsemblGRCm39 Ensembl
GRCm381322,040,960 - 22,041,362 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1322,040,636 - 22,041,362 (-)EnsemblGRCm38mm10GRCm38
MGSCv371322,132,685 - 22,133,221 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361322,048,281 - 22,048,817 (-)NCBIMGSCv36mm8
Celera1322,313,260 - 22,313,799 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map138.15NCBI
Hist1h4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,176,246 - 47,180,690 (+)NCBIGRCr8
mRatBN7.21742,480,467 - 42,484,912 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1742,480,313 - 42,485,370 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1744,530,209 - 44,534,658 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01749,289,303 - 49,293,753 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01743,780,258 - 43,784,712 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01744,522,144 - 44,526,587 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1744,522,140 - 44,526,583 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01758,943,971 - 58,948,414 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41750,113,499 - 50,117,942 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11750,116,339 - 50,120,783 (+)NCBI
Celera1753,976,729 - 53,981,173 (-)NCBICelera
Cytogenetic Map17p11NCBI
LOC100981824
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2541,784,458 - 41,790,190 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1637,785,914 - 37,791,120 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0626,971,978 - 26,975,626 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1627,633,627 - 27,637,235 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl627,634,245 - 27,634,556 (+)Ensemblpanpan1.1panPan2
LOC101967236
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946816,126 - 817,757 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366712,803,784 - 2,804,173 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H4C9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1721,224,973 - 21,225,379 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007973426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000019328   ⟹   ENSCSAP00000018748
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1114,670,283 - 14,670,591 (-)Ensembl
RefSeq Acc Id: XM_007973426   ⟹   XP_007971617
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11745,370,125 - 45,370,754 (-)NCBI
Vero_WHO_p1.0NW_02366604426,834,357 - 26,834,758 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007971617 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018748.1
Reference Protein Sequences
RefSeq Acc Id: XP_007971617   ⟸   XM_007973426
- UniProtKB: A0A0D9SD09 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018748   ⟸   ENSCSAT00000019328


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019238 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019328.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro CENP-T/H4_C UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  Histone_H4 UniProtKB/TrEMBL
  Histone_H4_CS UniProtKB/TrEMBL
  TAF_TATA-bd UniProtKB/TrEMBL
KEGG Report csab:103221971 UniProtKB/TrEMBL
  csab:103221993 UniProtKB/TrEMBL
  csab:103222007 UniProtKB/TrEMBL
  csab:103222008 UniProtKB/TrEMBL
  csab:103247796 UniProtKB/TrEMBL
NCBI Gene LOC103221971 ENTREZGENE
PANTHER HISTONE H4 UniProtKB/TrEMBL
  HISTONE H4 UniProtKB/TrEMBL
Pfam CENP-T_C UniProtKB/TrEMBL
PRINTS HISTONEH4 UniProtKB/TrEMBL
PROSITE HISTONE_H4 UniProtKB/TrEMBL
SMART SM00417 UniProtKB/TrEMBL
  TAF UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A0D9SD09 ENTREZGENE, UniProtKB/TrEMBL