TEX19 (testis expressed 19) - Rat Genome Database

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Gene: TEX19 (testis expressed 19) Chlorocebus sabaeus
Analyze
Symbol: TEX19
Name: testis expressed 19
RGD ID: 18409555
Description: ENCODES a protein that exhibits piRNA binding (ortholog); INVOLVED IN male meiotic nuclear division (ortholog); retrotransposon silencing (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: testis-expressed protein 19; testis-expressed sequence 19 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,269,731 - 74,272,047 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,270,403 - 74,270,897 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,919,144 - 45,921,305 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TEX19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,269,731 - 74,272,047 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,270,403 - 74,270,897 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,919,144 - 45,921,305 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TEX19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,359,247 - 82,363,775 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,359,247 - 82,363,775 (+)EnsemblGRCh38hg38GRCh38
GRCh371780,317,123 - 80,321,651 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,910,409 - 77,914,909 (+)NCBINCBI36Build 36hg18NCBI36
Celera1776,910,011 - 76,913,791 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,715,637 - 75,720,216 (+)NCBIHuRef
CHM1_11780,403,327 - 80,407,115 (+)NCBICHM1_1
T2T-CHM13v2.01783,228,349 - 83,232,937 (+)NCBIT2T-CHM13v2.0
Tex19.2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911121,007,041 - 121,009,503 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11121,007,041 - 121,009,503 (-)EnsemblGRCm39 Ensembl
GRCm3811121,116,215 - 121,118,677 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,116,215 - 121,118,677 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,977,529 - 120,979,991 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,932,307 - 120,934,767 (-)NCBIMGSCv36mm8
Celera11132,853,989 - 132,856,451 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.96NCBI
Tex19.2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,878,083 - 106,880,671 (-)NCBIGRCr8
mRatBN7.210106,379,757 - 106,382,344 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,379,757 - 106,382,344 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,482,468 - 111,485,053 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,945,526 - 110,948,111 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,300,208 - 106,302,795 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,305,926 - 110,308,514 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,305,928 - 110,308,514 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,892,724 - 109,895,312 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,325,885 - 110,353,003 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10104,918,466 - 104,921,052 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Tex19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955506773,128 - 775,155 (-)NCBIChiLan1.0ChiLan1.0
TEX19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,898,784 - 98,903,313 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,801,191 - 103,807,440 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,769,529 - 76,775,453 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,578,981 - 82,581,481 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,579,857 - 82,580,351 (+)Ensemblpanpan1.1panPan2
Tex19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602567,996 - 569,990 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936923807 - 1,835 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.112713,179 - 715,704 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2122,251 - 3,835 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 11
Below cutoff 8 6 8

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008013357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000019137   ⟹   ENSCSAP00000018559
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1674,270,403 - 74,270,897 (+)Ensembl
RefSeq Acc Id: XM_008013357   ⟹   XP_008011548
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11674,269,731 - 74,272,047 (+)NCBI
Vero_WHO_p1.0NW_02366607745,919,144 - 45,921,305 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008011548 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018559
  ENSCSAP00000018559.1
Reference Protein Sequences
RefSeq Acc Id: XP_008011548   ⟸   XM_008013357
- UniProtKB: A0A0D9SCH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018559   ⟸   ENSCSAT00000019137


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019047 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019137.1 UniProtKB/TrEMBL
InterPro TEX19 UniProtKB/TrEMBL
KEGG Report csab:103243767 UniProtKB/TrEMBL
NCBI Gene TEX19 ENTREZGENE
PANTHER PTHR31387 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 19 UniProtKB/TrEMBL
Pfam TEX19 UniProtKB/TrEMBL
UniProt A0A0D9SCH0 ENTREZGENE, UniProtKB/TrEMBL