RPS13 (ribosomal protein S13) - Rat Genome Database

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Gene: RPS13 (ribosomal protein S13) Chlorocebus sabaeus
Analyze
Symbol: RPS13
Name: ribosomal protein S13
RGD ID: 18409353
Description: ENCODES a protein that exhibits 5.8S rRNA binding (ortholog); INVOLVED IN negative regulation of RNA splicing (inferred); ribosomal small subunit biogenesis (inferred); translation (inferred); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1147,883,166 - 47,886,369 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl147,883,086 - 47,887,951 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038145,324,502 - 145,327,767 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPS13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1147,883,166 - 47,886,369 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl147,883,086 - 47,887,951 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038145,324,502 - 145,327,767 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RPS13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381117,074,388 - 17,077,667 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1117,074,388 - 17,077,715 (-)EnsemblGRCh38hg38GRCh38
GRCh371117,095,935 - 17,099,214 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,052,515 - 17,055,796 (-)NCBINCBI36Build 36hg18NCBI36
Build 341117,052,514 - 17,055,796NCBI
Celera1117,223,829 - 17,227,109 (-)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1116,780,196 - 16,782,772 (-)NCBIHuRef
CHM1_11117,095,545 - 17,098,826 (-)NCBICHM1_1
T2T-CHM13v2.01117,172,273 - 17,175,551 (-)NCBIT2T-CHM13v2.0
Rps13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397115,930,742 - 115,933,425 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7115,930,740 - 115,933,430 (-)EnsemblGRCm39 Ensembl
GRCm387116,331,507 - 116,334,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7116,331,505 - 116,334,195 (-)EnsemblGRCm38mm10GRCm38
MGSCv377123,475,021 - 123,477,704 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367116,122,661 - 116,125,283 (-)NCBIMGSCv36mm8
Celera7116,270,021 - 116,272,704 (-)NCBICelera
Cytogenetic Map7F1NCBI
cM Map761.61NCBI
Rps13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81180,007,230 - 180,009,660 (-)NCBIGRCr8
mRatBN7.21170,572,925 - 170,575,355 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1170,572,921 - 170,575,355 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl310,127,982 - 10,132,444 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1178,890,783 - 178,893,225 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01186,077,302 - 186,079,744 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01178,790,226 - 178,792,666 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01185,328,902 - 185,331,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl34,341,249 - 4,341,771 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01192,299,622 - 192,302,052 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41174,425,813 - 174,428,243 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11174,565,061 - 174,567,484 (-)NCBI
Celera1168,394,210 - 168,396,640 (-)NCBICelera
Cytogenetic Map1q35NCBI
Rps13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541431,887,626 - 31,890,439 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541431,887,626 - 31,890,439 (-)NCBIChiLan1.0ChiLan1.0
RPS13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2919,411,427 - 19,414,860 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11119,345,427 - 19,378,453 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01117,132,811 - 17,136,172 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11116,818,649 - 16,821,999 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1116,818,649 - 16,821,999 (-)Ensemblpanpan1.1panPan2
RPS13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12139,685,453 - 39,688,915 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2139,685,458 - 39,804,903 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2139,185,320 - 39,188,759 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02140,789,958 - 40,793,399 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2140,789,963 - 40,910,178 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12139,803,588 - 39,807,015 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02140,009,735 - 40,013,168 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02140,349,068 - 40,352,497 (-)NCBIUU_Cfam_GSD_1.0
Rps13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494745,939,329 - 45,942,247 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365281,972,927 - 1,979,327 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365281,973,353 - 1,976,227 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl242,030,248 - 42,033,378 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1242,030,585 - 42,033,382 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2245,084,836 - 45,087,635 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rps13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247668,692,468 - 8,695,749 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247668,692,468 - 8,695,811 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 20 60
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008005561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000002795   ⟹   ENSCSAP00000001090
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl147,883,086 - 47,887,951 (+)Ensembl
RefSeq Acc Id: XM_008005561   ⟹   XP_008003752
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1147,883,166 - 47,886,369 (+)NCBI
Vero_WHO_p1.0NW_023666038145,324,502 - 145,327,767 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008003752 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001090
  ENSCSAP00000001090.1
  ENSCSAP00000017696.1
Reference Protein Sequences
RefSeq Acc Id: XP_008003752   ⟸   XM_008005561
- UniProtKB: A0A0D9SA07 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000001090   ⟸   ENSCSAT00000002795


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000301 UniProtKB/TrEMBL
  ENSCSAG00000004762 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002795.1 UniProtKB/TrEMBL
  ENSCSAT00000018234.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.860.130 UniProtKB/TrEMBL
  S15/NS1, RNA-binding UniProtKB/TrEMBL
InterPro Ribosomal_S13/S15_N UniProtKB/TrEMBL
  Ribosomal_S15 UniProtKB/TrEMBL
  Ribosomal_S15P UniProtKB/TrEMBL
  S15_NS1_RNA-bd UniProtKB/TrEMBL
NCBI Gene RPS13 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S13 UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S13 UniProtKB/TrEMBL
  PTHR11885 UniProtKB/TrEMBL
Pfam Ribosomal_S13_N UniProtKB/TrEMBL
  Ribosomal_S15 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S15 UniProtKB/TrEMBL
SMART Ribosomal_S13_N UniProtKB/TrEMBL
  Ribosomal_S15 UniProtKB/TrEMBL
Superfamily-SCOP SSF47060 UniProtKB/TrEMBL
UniProt A0A0D9QXK1_CHLSB UniProtKB/TrEMBL
  A0A0D9SA07 ENTREZGENE, UniProtKB/TrEMBL