TBC1D30 (TBC1 domain family member 30) - Rat Genome Database

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Gene: TBC1D30 (TBC1 domain family member 30) Chlorocebus sabaeus
Analyze
Symbol: TBC1D30
Name: TBC1 domain family member 30
RGD ID: 18405529
Description: ENCODES a protein that exhibits GTPase activator activity (inferred); small GTPase binding (inferred); INVOLVED IN negative regulation of cilium assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN ciliary basal body (inferred); cilium (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11160,456,397 - 60,564,293 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1160,516,158 - 60,564,477 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037185,208,104 - 185,319,887 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TBC1D30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11160,456,397 - 60,564,293 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1160,516,158 - 60,564,477 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037185,208,104 - 185,319,887 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TBC1D30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381264,759,484 - 64,881,033 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1264,759,484 - 64,881,033 (+)EnsemblGRCh38hg38GRCh38
GRCh371265,153,264 - 65,274,813 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361263,460,856 - 63,561,079 (+)NCBINCBI36Build 36hg18NCBI36
Celera1264,839,404 - 64,937,879 (+)NCBICelera
Cytogenetic Map12q14.3NCBI
HuRef1262,269,165 - 62,325,612 (+)NCBIHuRef
CHM1_11265,185,470 - 65,241,929 (+)NCBICHM1_1
T2T-CHM13v2.01264,738,311 - 64,860,047 (+)NCBIT2T-CHM13v2.0
Tbc1d30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910121,099,724 - 121,187,549 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10121,099,725 - 121,187,183 (-)EnsemblGRCm39 Ensembl
GRCm3810121,263,819 - 121,351,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10121,263,820 - 121,351,278 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710120,700,875 - 120,748,245 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610120,666,479 - 120,718,932 (-)NCBIMGSCv36mm8
Celera10123,627,218 - 123,683,449 (-)NCBICelera
Cytogenetic Map10D2NCBI
Tbc1d30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8758,665,054 - 58,754,427 (-)NCBIGRCr8
mRatBN7.2756,779,570 - 56,869,092 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl756,782,165 - 56,870,515 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0763,361,443 - 63,409,760 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl763,361,696 - 63,407,241 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0763,585,333 - 63,631,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4760,564,501 - 60,611,576 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1760,585,483 - 60,653,319 (-)NCBI
Celera753,527,915 - 53,576,165 (-)NCBICelera
Cytogenetic Map7q22NCBI
Tbc1d30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545811,530,920 - 11,617,765 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545811,531,066 - 11,617,765 (+)NCBIChiLan1.0ChiLan1.0
TBC1D30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21029,490,225 - 29,609,529 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11229,486,991 - 29,606,300 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,042,551 - 24,164,052 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11224,546,158 - 24,646,299 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1224,551,186 - 24,645,916 (-)Ensemblpanpan1.1panPan2
TBC1D30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1107,435,353 - 7,514,411 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl107,430,381 - 7,512,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha107,370,949 - 7,450,012 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0107,546,022 - 7,625,360 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl107,539,959 - 7,625,359 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1107,411,038 - 7,490,082 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0107,663,625 - 7,742,741 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0107,794,211 - 7,873,289 (+)NCBIUU_Cfam_GSD_1.0
Tbc1d30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494550,992,374 - 51,079,423 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365453,074,561 - 3,117,918 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365453,075,135 - 3,117,750 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl529,248,091 - 29,298,407 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1529,206,134 - 29,298,401 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2532,235,370 - 32,291,607 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tbc1d30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248023,531,961 - 3,579,864 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248023,533,703 - 3,623,349 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 16 32
Low 19 20 28
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000002449   ⟹   ENSCSAP00000000758
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1160,516,158 - 60,564,477 (+)Ensembl
RefSeq Acc Id: XM_008003904   ⟹   XP_008002095
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11160,456,399 - 60,564,293 (+)NCBI
Vero_WHO_p1.0NW_023666037185,208,104 - 185,319,887 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008003905   ⟹   XP_008002096
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11160,510,359 - 60,564,293 (+)NCBI
Vero_WHO_p1.0NW_023666037185,208,104 - 185,264,675 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008002095 (Get FASTA)   NCBI Sequence Viewer  
  XP_008002096 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000758
  ENSCSAP00000000758.1
Reference Protein Sequences
RefSeq Acc Id: XP_008002095   ⟸   XM_008003904
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008002096   ⟸   XM_008003905
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QWL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000000758   ⟸   ENSCSAT00000002449


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004418 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002449.1 UniProtKB/TrEMBL
Gene3D-CATH putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro Rab-GTPase-TBC_dom UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  Tbc1d30_C UniProtKB/TrEMBL
NCBI Gene TBC1D30 ENTREZGENE
PANTHER TBC1 DOMAIN FAMILY MEMBER 30 UniProtKB/TrEMBL
  TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT UniProtKB/TrEMBL
Pfam DUF4682 UniProtKB/TrEMBL
  RabGAP-TBC UniProtKB/TrEMBL
PROSITE TBC_RABGAP UniProtKB/TrEMBL
SMART TBC UniProtKB/TrEMBL
Superfamily-SCOP SSF47923 UniProtKB/TrEMBL
UniProt A0A0D9QWL9 ENTREZGENE, UniProtKB/TrEMBL