ZC3H10 (zinc finger CCCH-type containing 10) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ZC3H10 (zinc finger CCCH-type containing 10) Chlorocebus sabaeus
Analyze
Symbol: ZC3H10
Name: zinc finger CCCH-type containing 10
RGD ID: 18404215
Description: ENCODES a protein that exhibits metal ion binding (inferred); miRNA binding (inferred); RNA binding (inferred); INVOLVED IN post-transcriptional regulation of gene expression (ortholog); ASSOCIATED WITH genetic disease (ortholog); hyperglycemia (ortholog); Insulin Resistance (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger CCCH domain-containing protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,057,090 - 52,062,998 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,061,065 - 52,062,369 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,921,680 - 193,927,673 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZC3H10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,057,090 - 52,062,998 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,061,065 - 52,062,369 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,921,680 - 193,927,673 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZC3H10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,118,266 - 56,127,514 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,118,260 - 56,127,514 (+)EnsemblGRCh38hg38GRCh38
GRCh371256,512,050 - 56,521,298 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,798,297 - 54,802,545 (+)NCBINCBI36Build 36hg18NCBI36
Celera1256,164,175 - 56,168,423 (+)NCBICelera
Cytogenetic Map12q13.2NCBI
HuRef1253,551,163 - 53,555,411 (+)NCBIHuRef
CHM1_11256,479,395 - 56,483,643 (+)NCBICHM1_1
T2T-CHM13v2.01256,085,864 - 56,095,112 (+)NCBIT2T-CHM13v2.0
Zc3h10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,379,429 - 128,383,877 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,377,832 - 128,383,643 (-)EnsemblGRCm39 Ensembl
GRCm3810128,543,560 - 128,548,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,541,963 - 128,547,774 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710127,980,619 - 127,984,800 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,946,512 - 127,950,693 (-)NCBIMGSCv36mm8
Celera10130,935,513 - 130,939,695 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.01NCBI
Zc3h10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,557,948 - 1,562,129 (-)NCBIGRCr8
mRatBN7.27973,415 - 977,742 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7972,855 - 979,349 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,735,524 - 3,739,618 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,611,514 - 5,615,609 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,909,127 - 5,913,224 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,968,428 - 2,972,521 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,968,435 - 2,972,521 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.072,942,056 - 2,946,149 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,835,469 - 1,839,562 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7844,004 - 848,097 (-)NCBICelera
Cytogenetic Map7q11NCBI
Zc3h10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,720,709 - 3,725,196 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,720,451 - 3,725,196 (+)NCBIChiLan1.0ChiLan1.0
ZC3H10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,209,214 - 38,213,572 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,200,970 - 38,210,340 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,792,504 - 32,810,418 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11233,042,271 - 33,047,463 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,043,757 - 33,045,061 (-)Ensemblpanpan1.1panPan2
ZC3H10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110439,163 - 445,587 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10500,926 - 507,352 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010446,056 - 452,483 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10446,115 - 451,604 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110423,513 - 429,939 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010666,634 - 673,060 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010790,644 - 797,072 (+)NCBIUU_Cfam_GSD_1.0
Zc3h10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,335,968 - 58,341,768 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646528,455 - 532,694 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646528,455 - 534,267 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC3H10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,508,218 - 21,514,590 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,506,510 - 21,513,972 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2522,975,699 - 22,981,580 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Zc3h10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,886,878 - 11,891,491 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480211,886,029 - 11,891,640 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 23 22
Low 13 20 38
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000018983   ⟹   ENSCSAP00000018412
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1152,061,065 - 52,062,369 (+)Ensembl
RefSeq Acc Id: XM_008003613   ⟹   XP_008001804
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11152,057,090 - 52,062,998 (+)NCBI
Vero_WHO_p1.0NW_023666037193,921,680 - 193,927,624 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037996961   ⟹   XP_037852889
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037193,921,680 - 193,925,862 (-)NCBI
RefSeq Acc Id: XR_005239954
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037193,926,594 - 193,927,505 (-)NCBI
RefSeq Acc Id: XR_005239955
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037193,926,591 - 193,927,673 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008001804 (Get FASTA)   NCBI Sequence Viewer  
  XP_037852889 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018412
  ENSCSAP00000018412.1
Reference Protein Sequences
RefSeq Acc Id: XP_008001804   ⟸   XM_008003613
- UniProtKB: A0A0D9SC23 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018412   ⟸   ENSCSAT00000018983
RefSeq Acc Id: XP_037852889   ⟸   XM_037996961
- UniProtKB: A0A0D9SC23 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018893 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018983.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.210 UniProtKB/TrEMBL
InterPro Znf_CCCH UniProtKB/TrEMBL
KEGG Report csab:103238509 UniProtKB/TrEMBL
NCBI Gene ZC3H10 ENTREZGENE
PANTHER MUSCLEBLIND-LIKE PROTEIN UniProtKB/TrEMBL
  ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 10 UniProtKB/TrEMBL
Pfam zf-CCCH UniProtKB/TrEMBL
  zf-CCCH_2 UniProtKB/TrEMBL
PROSITE ZF_C3H1 UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/TrEMBL
UniProt A0A0D9SC23 ENTREZGENE, UniProtKB/TrEMBL