MRPL23 (mitochondrial ribosomal protein L23) - Rat Genome Database

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Gene: MRPL23 (mitochondrial ribosomal protein L23) Chlorocebus sabaeus
Analyze
Symbol: MRPL23
Name: mitochondrial ribosomal protein L23
RGD ID: 18403949
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN mitochondrial translation (inferred); translation (inferred); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN fibrillar center (ortholog); mitochondrial ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L23, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111,768,292 - 1,777,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603898,966,075 - 98,975,579 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPL23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111,768,292 - 1,777,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603898,966,075 - 98,975,579 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MRPL23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,947,332 - 2,014,944 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,947,278 - 1,984,522 (+)EnsemblGRCh38hg38GRCh38
GRCh37111,968,562 - 2,036,174 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,925,114 - 1,934,408 (+)NCBINCBI36Build 36hg18NCBI36
Build 34111,925,113 - 1,934,408NCBI
Celera112,007,763 - 2,016,982 (+)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef111,763,190 - 1,768,900 (+)NCBIHuRef
CHM1_1111,967,443 - 1,976,662 (+)NCBICHM1_1
T2T-CHM13v2.0112,035,120 - 2,102,503 (+)NCBIT2T-CHM13v2.0
Mrpl23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397142,086,423 - 142,094,484 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7142,086,423 - 142,094,484 (+)EnsemblGRCm39 Ensembl
GRCm387142,532,467 - 142,540,747 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7142,532,686 - 142,540,747 (+)EnsemblGRCm38mm10GRCm38
MGSCv377149,719,022 - 149,726,647 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367142,342,507 - 142,350,132 (+)NCBIMGSCv36mm8
Celera7142,288,959 - 142,296,584 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map787.95NCBI
Mrpl23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81207,116,930 - 207,124,702 (+)NCBIGRCr8
mRatBN7.21197,687,452 - 197,695,222 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1197,687,347 - 197,695,222 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1206,060,183 - 206,067,951 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,146,053 - 213,153,825 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01205,820,207 - 205,827,980 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01215,701,544 - 215,709,313 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1215,701,544 - 215,709,313 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01222,596,334 - 222,604,103 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41202,780,065 - 202,787,834 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11202,940,526 - 202,948,296 (+)NCBI
Celera1195,305,313 - 195,313,082 (+)NCBICelera
Cytogenetic Map1q41NCBI
Mrpl23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542213,735,603 - 13,743,575 (+)NCBIChiLan1.0ChiLan1.0
MRPL23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,373,684 - 4,389,189 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,585,070 - 3,600,569 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0111,988,470 - 1,997,722 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,018,942 - 2,028,025 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl112,018,942 - 2,055,546 (+)Ensemblpanpan1.1panPan2
MRPL23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,166,698 - 46,173,480 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1844,776,560 - 44,783,286 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01846,847,748 - 46,854,614 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1846,847,820 - 46,854,614 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11846,295,044 - 46,301,839 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01845,875,323 - 45,882,074 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01846,621,591 - 46,628,414 (+)NCBIUU_Cfam_GSD_1.0
Mrpl23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049471,583,536 - 1,596,139 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936816837,660 - 850,259 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.121,346,864 - 1,356,539 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Mrpl23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476714,818,262 - 14,826,620 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 18 60
Low 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: XM_037998821   ⟹   XP_037854749
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603898,966,075 - 98,975,579 (+)NCBI
RefSeq Acc Id: XM_037998822   ⟹   XP_037854750
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603898,966,681 - 98,975,579 (+)NCBI
RefSeq Acc Id: XM_037998823   ⟹   XP_037854751
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603898,967,195 - 98,975,579 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037854749 (Get FASTA)   NCBI Sequence Viewer  
  XP_037854750 (Get FASTA)   NCBI Sequence Viewer  
  XP_037854751 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006049.1
  ENSCSAP00000018555.1
Reference Protein Sequences
RefSeq Acc Id: XP_037854749   ⟸   XM_037998821
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RBR0 (UniProtKB/TrEMBL),   A0A0D9SCG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037854750   ⟸   XM_037998822
- Peptide Label: isoform X2
- UniProtKB: A0A0D9SCG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037854751   ⟸   XM_037998823
- Peptide Label: isoform X3
- UniProtKB: A0A0D9SCG6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009837 ENTREZGENE, UniProtKB/TrEMBL
  ENSCSAG00000019043 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007888.1 UniProtKB/TrEMBL
  ENSCSAT00000019133.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  Ribosomal_L23/L15e_core_dom_sf UniProtKB/TrEMBL
  Ribosomal_L25/23 UniProtKB/TrEMBL
KEGG Report csab:103238649 UniProtKB/TrEMBL
NCBI Gene MRPL23 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L23, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12059 UniProtKB/TrEMBL
Pfam Ribosomal_L23 UniProtKB/TrEMBL
Superfamily-SCOP SSF54189 UniProtKB/TrEMBL
UniProt A0A0D9RBR0 ENTREZGENE, UniProtKB/TrEMBL
  A0A0D9SCG6 ENTREZGENE, UniProtKB/TrEMBL