LTV1 (LTV1 ribosome biogenesis factor)

Gene: LTV1 (LTV1 ribosome biogenesis factor) Chlorocebus sabaeus

Analyze

Symbol:

LTV1

Name:

LTV1 ribosome biogenesis factor

RGD ID:

18403865

Description:

INVOLVED IN ribosomal small subunit biogenesis (inferred); ribosomal small subunit export from nucleus (inferred); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 4 (ortholog); genetic disease (ortholog); inflammatory poikiloderma with hair abnormalities and acral keratoses (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

protein LTV1 homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	29,362,386 - 29,380,831 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	29,361,750 - 29,380,911 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	1,494,965 - 1,513,448 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial hemophagocytic lymphohistiocytosis 4 (ISO)

genetic disease (ISO)

inflammatory poikiloderma with hair abnormalities and acral keratoses (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ribosomal small subunit biogenesis (IEA)

ribosomal small subunit export from nucleus (IEA)

Cellular Component

cytosol (IEA)

nucleoplasm (IEA)

nucleus (IEA)

preribosome, small subunit precursor (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LTV1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	29,362,386 - 29,380,831 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	29,361,750 - 29,380,911 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	1,494,965 - 1,513,448 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LTV1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	143,843,338 - 143,863,812 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	143,843,338 - 143,863,812 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	144,164,475 - 144,184,949 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	144,206,201 - 144,226,636 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	144,206,200 - 144,226,634	NCBI
Celera	6	144,904,917 - 144,925,352 (+)	NCBI		Celera
Cytogenetic Map	6	q24.2	NCBI
HuRef	6	141,728,279 - 141,748,714 (+)	NCBI		HuRef
CHM1_1	6	144,427,386 - 144,447,836 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	145,036,018 - 145,056,492 (+)	NCBI		T2T-CHM13v2.0

Ltv1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	13,054,341 - 13,068,881 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	13,053,884 - 13,068,912 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	13,178,597 - 13,193,137 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	13,178,140 - 13,193,168 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	12,898,443 - 12,912,943 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	12,868,338 - 12,883,320 (-)	NCBI		MGSCv36	mm8
Celera	10	13,077,424 - 13,091,756 (-)	NCBI		Celera
Cytogenetic Map	10	A2	NCBI
cM Map	10	4.72	NCBI

Ltv1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	9,385,834 - 9,398,557 (-)	NCBI		GRCr8
mRatBN7.2	1	7,565,673 - 7,578,398 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	7,565,669 - 7,578,563 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	7,262,122 - 7,274,861 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	13,261,245 - 13,273,984 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	7,544,410 - 7,557,149 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	7,323,043 - 7,335,766 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	7,323,040 - 7,335,936 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	8,958,291 - 8,971,014 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	7,956,276 - 7,968,999 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	7,956,277 - 7,968,999 (-)	NCBI
Celera	1	6,054,558 - 6,067,290 (-)	NCBI		Celera
Cytogenetic Map	1	p13	NCBI

Ltv1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	16,580,704 - 16,592,044 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955436	16,580,412 - 16,593,093 (-)	NCBI	ChiLan1.0	ChiLan1.0

LTV1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	163,821,765 - 163,845,985 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	161,716,246 - 161,740,467 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	141,618,967 - 141,639,525 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	146,338,914 - 146,359,457 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	146,340,044 - 146,359,171 (+)	Ensembl	panpan1.1		panPan2

LTV1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	35,360,262 - 35,373,832 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	36,256,143 - 36,269,711 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	35,541,320 - 35,554,892 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	35,541,357 - 35,594,842 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl	1	35,544,535 - 35,549,686 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	35,401,761 - 35,415,334 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	35,287,018 - 35,300,585 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	35,597,259 - 35,610,834 (+)	NCBI		UU_Cfam_GSD_1.0

Ltv1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	130,309,860 - 130,322,330 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936625	2,312,472 - 2,325,799 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936625	2,313,232 - 2,325,739 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LTV1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	21,412,286 - 21,430,195 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	21,406,949 - 21,430,252 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	23,807,023 - 23,818,338 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Ltv1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624753	10,428,383 - 10,444,913 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	10	53
Low		10	7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008006796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000015187 ⟹ ENSCSAP00000013134

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	13	29,361,750 - 29,380,911 (-)	Ensembl

RefSeq Acc Id:

XM_008006796 ⟹ XP_008004987

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	13	29,362,386 - 29,380,831 (-)	NCBI
Vero_WHO_p1.0	NW_023666040	1,494,965 - 1,513,448 (-)	NCBI

Sequence:

show sequence

CCATGGCCGACTGGGTGACGTTATCGCCGGGTGTTGGGGTCGCACGTGTGGTGAGGCATACAGA
GGCGGCCTTGGGCTGGGCCTTGGTCTCCCCGCTGGACTTCGAGGGTATCTTCGCCGCCTCTGTT
GGGGGTGAGCGCCGCGCGGCTGCAGCATGCCTCACAGGAAGAAAAAACCCTTTATAGAGAAGAA
GAAAGCTGTGTCTTTTCACTTGGTCCACCGGAGCCAACGAGATCCTTTAGCAGCAGATGAGACT
GCACCCCAAAGGGTTCTGTTGCCCACACAAAAAATAGACAGTGAGGAAAGGCGAGCAGAACAGA
GGAAGTATGGAGTGTTCTTTGATGATGACTATGACTACCTGCAGCACCTGAAGGAACCATCTGG
GCCCTCAGAGCTTATTCCCTCAAGTACCTTCAGTGCACACAACCGGAGAGAAGAGAAAGAAGAA
TCGCTAGTCATTCCAAGCACTGGAATTAAGTTGCCTTCATCAGTGTTTGCTTCAGAGTTTGAGG
AAGATGTTGGATTGTTAAATAAAGCAGCTCCAGTTTCAGGACCTCGACTGGATTTTGATCCTGA
CATTGTTGCAGCTCTTGATGATGATTTTGACTTTGATGATCCAGATAATCTGCTTGAGGATGAC
TTTATTCTTCAGGCCAATAAATCAACAGGAGAGGAAGAGGGAAGGGATATACAGAAATCTGAGA
ATGAAGATGACAGCGAGTGGGAAGATGTGGATGATGAGAAGGGAGATAGCAGTGATGACTATGA
CTCTGCAGGCCTATTGTCAGATGAAGATCATATGTCTGTGCCCGGAAAAACCCACAGAGCTATA
GCAGATCACTTGTTCTGGAGTGAGGAAACAAAAAGTCGCTTCACCGAGTATTCGATGACTTCCT
CAGTCATGAGGAGAAATGAACAGCTGACCCTACATGATGAGAGGTTTGAGAAGTTTTATGAGCA
ATATGATGATGATGAAATTGGAGCTCTGGATAATGCAGAATTGGAAGGTTCTATTCAAGTGGAC
AGCAATCGCTTACAGGAAGTTTTGAATGACTACTATAAAGAAAAGGCAGAGAATTGTGTAAAAT
TGAATACTCTTGAACCCTTGGAGGATCAAGACCTGCCAATGAATGAGTTTGATGAGTCTGAGGA
GGAAGAAATGATTACTGTAGTCCTTGAAGAAGCCAAAGAGAAGTGGGATTGTGAATCTATTTGT
AGTACATACTCAAATTTATATAACCATCCACAGCTTATCAAGTATCAACCAAAGCCGAAACAAA
TTCGAATATCTTCTAAAACAGGAATACCTCTCAATGTCTTACCAAAGCAAGGACTCACAGCAAA
GCAAGCTGAAAGAATACAGATGATTAATGGCAGTGACCTTCCTAAAGTATCAACCCAGCCACGT
TCTAAAAACGAAAGCAAAGAAGATAAAAGAGCAAGAAAGCAAGCTATCAAAGAAGAGCGCAAGG
AACGAAGAGTGGAGAAGAAAGCTAACAAGTTAGCATTTAAACTGGAGAAAAGAAGGCAAGAAAA
AGAGCTGCAGAACTTGAAGAAGAATGTTGAGGGTCTAAAGCTATAGACAGTGGAGCATACAGGG
CAAGGTACTTTATTAGGGGCTCTTCATTATCTTTAGTCATTGACTAGAACCTTCAGAAAGACAA
AACTGTTTGCCATTTTACTGGCAGATAAGAGGAAAATACAGTATTTGTATTATTTTTATACCAG
CAAGTGTCCCCTGCCAGCTGTCTTGTAAATACTGTAATGTTTTAATTTTTAATATTTTAAGCTT
ACATTTGCTCTGAAATAAATGACTTCATGAATGTGAAATGTTTGGATAAATTAAAGGAAAATAT
CTTCATAACTTGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008004987	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000013134
	ENSCSAP00000013134.1

RefSeq Acc Id:	XP_008004987 ⟸ XM_008006796
- UniProtKB:	A0A0D9RWZ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000013134 ⟸ ENSCSAT00000015187

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000017092	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000015187.1	UniProtKB/TrEMBL
InterPro	Ltv1	UniProtKB/TrEMBL
KEGG Report	csab:103240246	UniProtKB/TrEMBL
NCBI Gene	LTV1	ENTREZGENE
PANTHER	PROTEIN LTV1 HOMOLOG	UniProtKB/TrEMBL
	PTHR21531	UniProtKB/TrEMBL
Pfam	LTV	UniProtKB/TrEMBL
UniProt	A0A0D9RWZ5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations