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Gene: RUBCN (rubicon autophagy regulator) Chlorocebus sabaeus

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Symbol:

RUBCN

Name:

rubicon autophagy regulator

RGD ID:

18403461

Description:

ENCODES a protein that exhibits phosphatidylinositol 3-kinase inhibitor activity (inferred); phosphatidylinositol phosphate binding (inferred); INVOLVED IN autophagy (inferred); negative regulation of autophagosome maturation (inferred); negative regulation of autophagy (inferred); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 15 (ortholog); Developmental Disabilities (ortholog); spinocerebellar ataxia type 15 (ortholog); FOUND IN Golgi apparatus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RUN and cysteine rich domain containing beclin 1 interacting protein; run domain Beclin-1 interacting and cysteine-rich containing protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	91,401,565 - 91,468,837 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	91,400,031 - 91,457,933 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	65,343,040 - 65,400,021 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive spinocerebellar ataxia 15 (ISO)

Developmental Disabilities (ISO)

spinocerebellar ataxia type 15 (ISO)

Spinocerebellar Ataxias (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagy (IEA)

negative regulation of autophagosome maturation (IEA)

negative regulation of autophagy (IEA)

negative regulation of endocytosis (IEA)

negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (IEA)

Cellular Component

cytosol (IEA)

early endosome (IEA)

Golgi apparatus (ISO)

late endosome (IEA)

nucleoplasm (IEA)

Molecular Function

phosphatidylinositol 3-kinase inhibitor activity (IEA)

phosphatidylinositol phosphate binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

autophagy pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

RUBCN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	91,401,565 - 91,468,837 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	91,400,031 - 91,457,933 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	65,343,040 - 65,400,021 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

RUBCN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	197,668,867 - 197,749,820 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	197,668,867 - 197,749,727 (-)	Ensembl			hg38	GRCh38
GRCh37	3	197,395,738 - 197,476,691 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	198,882,656 - 198,948,170 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	196,014,953 - 196,093,675 (-)	NCBI		Celera
Cytogenetic Map	3	q29	NCBI
HuRef	3	194,700,863 - 194,779,394 (-)	NCBI		HuRef
CHM1_1	3	197,369,082 - 197,447,450 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	200,401,254 - 200,482,196 (-)	NCBI		T2T-CHM13v2.0

Rubcn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	32,642,072 - 32,698,121 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	32,642,073 - 32,698,136 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	32,821,702 - 32,877,729 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	32,821,703 - 32,877,766 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	32,821,822 - 32,868,425 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	32,821,822 - 32,868,425 (-)	NCBI		MGSCv36	mm8
Celera	16	33,300,550 - 33,347,537 (-)	NCBI		Celera
Cytogenetic Map	16	B3	NCBI
cM Map	16	23.38	NCBI

Rubcn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	81,420,261 - 81,469,415 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	81,412,617 - 81,469,424 (+)	Ensembl				GRCr8
mRatBN7.2	11	67,907,534 - 67,964,347 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	67,907,516 - 67,964,314 (+)	Ensembl				mRatBN7.2
Rnor_6.0	11	71,150,506 - 71,199,254 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	71,151,132 - 71,197,035 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	74,228,171 - 74,284,327 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	69,735,303 - 69,784,725 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	67,351,336 - 67,408,299 (+)	NCBI		Celera
RGSC_v3.1	11	69,791,474 - 69,840,095 (+)	NCBI
Cytogenetic Map	11	q22	NCBI

Rubcn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	12,123,450 - 12,187,154 (+)	Ensembl
ChiLan1.0	NW_004955420	12,124,193 - 12,187,154 (+)	NCBI	ChiLan1.0	ChiLan1.0

RUBCN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	195,582,351 - 195,663,052 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	195,590,157 - 195,671,134 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	195,088,936 - 195,166,771 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	204,974,746 - 205,049,871 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	204,973,968 - 205,034,011 (-)	Ensembl			panPan2	panpan1.1

RUBCN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	28,947,439 - 29,011,737 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	28,946,944 - 29,009,346 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	28,968,568 - 29,032,995 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	29,178,166 - 29,242,864 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	29,178,166 - 29,243,273 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	28,974,845 - 29,039,065 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	29,021,133 - 29,085,572 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	29,641,226 - 29,705,388 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rubcn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	125,447,313 - 125,515,113 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936784	383,899 - 438,275 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936784	370,173 - 438,263 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RUBCN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	134,299,152 - 134,353,374 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	134,299,971 - 134,363,620 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	143,893,948 - 143,947,349 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Rubcn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	61,040,857 - 61,112,926 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	61,040,848 - 61,111,998 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rubcn
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	17,627,756 - 17,673,586 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in RUBCN
2020 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008009696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008009697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008009698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008009699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008009700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008009701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073023795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073023796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073023797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073023798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073023799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073023800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073023801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073023802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JBLKOC010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000006532 ⟹ ENSCSAP00000004736

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	15	91,400,031 - 91,457,933 (-)	Ensembl

RefSeq Acc Id:

XM_008009697 ⟹ XP_008007888

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	15	91,401,568 - 91,457,928 (-)	NCBI
Vero_WHO_p1.0	NW_023666041	65,343,040 - 65,400,021 (-)	NCBI

Sequence:

show sequence

ATAGAAGCCGCAACCCAGGCGGCTGTCTCTGCCGCCGCTGCCGCCGCCCGTGTGTAGCGCATCA
CCCGGAGCCCACCGGCCGTGGGTGCCTCCTCCGGCCCCAGGGGCCCCCCGGGAGCCCTGAAGGG
CGAAGCGGCGGGGGCGCCTGTCTTGGGCGAAGAGGCGGCCTGGCCGCCCCGGATGCGGCCGGAG
GGCGCGGGAATGGAGCTCGGGGGCGGCGAGGAGCGCCTGGCTGAGGAGAGCAGGAGGGAACACT
GGCAGTTGCTGGGCCATTTGAAGACTACGGTGGAGGGTTTGGTATCAGCCAGCAGCCCCAACGT
CTGGTCTAAGTATGGTGGCTTGGAGCGGCTCTGCAGGGACATGCAGAGCATCCTCTATCACGGG
CTTATCCGTGACCAGGCGTGCCGTCGCCAGACTGATTACTGGCAGTTCGTGAAAGACATCCGGT
GGCTCAGTCCCCACTCAGCCCTTCACGTGGAGAAGTTCATCAGCTTGCACGAGAACGGCCAGAG
CAGTGCTGATGGTGTGAGTGAACGTGCTGTTGCCGAGTTGTGGCTGCAGCACAGCCTGCAATAC
CACTGCCTCTCAGCCCAGCTCCGGCCTCTGCTCGGGGATAGACAGTACATCAGAAAATTCTACA
CAGATGCTGCTTTCCTGCTAAGTGATGCTCACGTCACGGCCATGCTTCAGTGCCTGGAAGCAGT
GGAACAGAACAACCCCCGCCTCCTGGCTCAGATAGATGCATCCATGTTTGCCAGAAAGCACGAG
AGCCCACTCCTGGTGACAAAGAGCCAGAGCCTGACAGCCCTGCCCAGTTCCACATACACCCCTC
CAACCAGCTATGCTCAGCATTCCTACTTTGGGTCCTTCTCTAGCCTCCACCAATCCATGCCCAA
CAATGGCTCAGAGAGAAGATCTACTTCCTTTTCACTCTCTGGCCCTCCCCGGAAACCTCAAGAA
AGCAGAGGGCACGTCTCACCAGCAGAGGATCAAACCATCCAAGCCCTCCCGGTTTCAGTCTCTG
CACTAGCCAGGAATTCCCCCTTAACCCCAAATGAGATGAGCTCCAGTACTCTGACCAGCCCTAT
AGAGGCATCCTGGGTCAGCAGCCAGAATGATTCCCCAAGTGATGCCAGTGAGGGGCCTGAGTAC
CTGGCCATTGGCAACTTGGACCCCCGAGGCCGGACTGCCAGCTGTCAGAGTCACAGCAGCAATG
CTGAGAGCAGCAGCTCCAATTTGTTCTCCTCCAGCAGCTCCCAGAAGCCAGATTCTGCTGCCTC
TTCCTTAGGGGACCAGGAGGGAGGTGAGGAGAGCCAGCTGTCCAGTGTCCTCCGCAGGTCCAGC
TTCTCAGAGGGGCAGACACTCACCGTCACCAGTGGGGCAAAGAAGAGCCATATTCGCTCCCATT
CGGATACCAGCATCGCCTCCAGAGGAGCTCCAGGAGGTCCCAGGAATATCACCATTATAGTTGA
AGATCCCATTGCAGAATCCTGCAATGATAAGGCGAAGTTGAGAGGCCACTTGCCCTACTCGGGT
CAAAGCAGTGAAGTCAGCACACCCAGTTCTCTGTACATGGAGTATGGTGGTCGGTACCTGTGCT
CAGGGGAAGGCATGTTCCGAAGACCATCAGAAGGACAGTCCCTCATCAGCTACCTCTCTGAGCA
AGACTTCGGCAGCTGTGCCGACCTGGAAAAGGAGAATGCCCACTTCAGCATCTCAGAGTCCTTA
ATCGCTGCCATCGAGCTAATGAAGTGCAACATGATGAGCCGGTGCCTGGAGGAGGGGGAGGAAG
AGGAAGACAGTGACAGAGAGATCCAGGAGCTGAAGCAGAAGATCCGCCTTCGGCGCCAGCAAAT
CCGCACCAAGAACCTGCTCCCTGTGTACCAGGAGGCTGAGCATGGAAGCTTTCGGGTCACCTCC
AGCAGCTCCCAGTTCAGCTCACGCGATTCGGCACATCTCTCTGACTCTGGCTCTGCTGATGAGG
TTGATGAATTTGAAATCCAAGATGGTAGTGAAGGATCTAACCTGACTCACATATCAAAGAACGG
ACTGTCAGTGTCACTGGCCTCGATGTTCTCAGATGCTGACATCAGAAGGAACACAGCCTCAAGC
AGCAGATCCTTCGTCTCCTCCCAGTCCTTCTCCCACGGCTTCCTGCACTCCACATCTGCTGAGG
CGGTGGCCATGGGGCTCCTGAAGCAGTTTGAGGGGATGCAGCTTCCAGCTGCCTCAGAGCTGGA
GTGGCTCGTCCCGGAGCACGACGCCCCTCAGAAGCTTCTACCCATCCCTGACTCACTGCCCATC
TCACCGGATGACGGGCAGCACGCTGACATCTACAAGCTGCGGATTCGTGTTCGTGGCAACTTGG
AGTGGGCCCCCCCCCGGCCTCAGATAATTTTTAATGTTCATCCCGCCCCAACGAGGAAAATTGC
CGTGGCCAAGCAGAATTACCGCTGTGCAGGATGTGGCATCCGGACTGACCCTGATTATATCAAG
CGACTGCGGTACTGTGAGTACCTGGGCAAGTACTTCTGCCAGTGCTGCCATGAGAATGCACAGA
TGGTCATCCCCAGCCGGCTTCTGCGCAAGTGGGACTTCAGCAAGTACTACGTCAGCAATTTCTC
CAAGGACCTGCTCATTAAGATCTGGAATGATCCTCTCTTCAACGTGCAGGACATAAACAGTGCC
CTCTACAGGAAGGTCAAGCTGCTCAATCAAGTCCGGCTGCTGCGGGTCCAGCTATGTCACATGA
AGAACATGTTCAAGACTTGCCGACTGGCCAAGGAGCTTCTGGATTCCTTTGACACAGTCCCGGG
CCACCTGACAGAGGACCTCCACCTGTACTCACTGAATGATCTGACGGCGACCAGGAAGGGGGAG
CTGGGGCCCCGGCTTGCTGAGCTCACCAGGGCAGGGGCTGCCCATGTGGAGAGATGCATGCTCT
GCCAAGCCAAGGGCTTCATCTGTGAGTTCTGTCAGAACGAGGATGACATCATCTTTCCCTTTGA
GCTCCATAAGTGCCGGACCTGTGAAGAGTGTAAAGCGTGTTACCATAAAGCCTGCTTCAAGTCT
GGAAGCTGTCCGCGCTGCGAGCGGCTGCAGGCCCGGCGGGAGGCCCTGGCCAGGCAGAGCCTGG
AGTCTTACCTGTCGGACTTCGAGGAGGAGCCCGCCGAAGCGTTGGCCCTGGAAGCCGCCGTCCT
GGAGGCCACCTGAAGAAAGCACATGAAGCCCCTGTCTGGGCCGGGGTCACACATATTGCAGAAC
TGAGCCACTCTTTGAAGGACTTGCCCCACCTGGGGCTGCTTCTTTTTTTTAATTATCTTTTTTT
TTTACTGTCTGACGTCCGTGTGCAGTCAGCCTTTGGTAGGTTGATGGGTCCAGAGTCTGTGGTG
ACAGATAATTTGTAAGCTCCAGGTGTTTTCATCAGAACTGACATGTGGGTCCTTCAGTGAAGCT
TCTAGTGCCTCTGTCAGGGGAAGAGACAGCAAGACCCAGTTCCTCCAGCGTCTGTGGCCTTCTC
TAGAACCAGACCTGGTTTCACCTGCATGTCAAGTATCTTTTCCAGTTTTCCTTTGTTTTCGTTC
TGGAGCTTCTGAGCCAGGCCTTTCTCAGCCACCTCTCCTCCTGCTGCTGAAACGGTGGCGTTCT
CTCTCTCCCTGTCCTGGATTGGGGTCAGACTGTGCCCCGAGGAGAAGCAGCAGAGAATGGGACT
ACGTCATGGGCATTTTGTCCACTTATTTGGGTATTTTGGGGGCCACAGAACAATCATGACTATC
CTAGACTCCTCAGAGACCTCAGAGAGGCAGCCGTGAATGTCGCTGTGTTGCTGGGATTTCCCGT
TTGGAATATGTGAAGTATAGATGATGCCAGAAGCTGACTTTCTTCATCTGCCCTGGTGAGCTTG
AAGCAAAGAGCAGAACTGATGCGTAGGCCAGGCTCGTCTGCAGCCTTATGCCACAAGCACACGT
GAGGCGGCAGCTCTGCTGCTGAAGGAGCACTTAGGTGTTAAGGTCTCTTTTAGTTAACCTGGCT
TTTTGATGCAGGTATGATCTTTGAAGCTCAGGCAAGTCCCTGATGCCATCCTAAGGTGAGGACA
GGAACCCCACCCACCCTCTTAGTGTGTCCCTGACCACTCTGTCATCTGTTCGATGGTCATTGTG
GTTCTCAGTGAAAGTACAACCCAACTCCCTTCTCTCTCCCCTTGTGCAGCAGAGCTGCATCCTT
CCCTGGTGGCCGAGTCTCTCTTGCCTTAGCTTCTGTGGTCAAAGTTGGAGAAAAGCTTCCTGCT
ATTAGTGCTGTGACAGAACTCGACAGTTTGTGGATGTGAGTGTGATGTTCTGTGTTCTTGGGAT
AACAAGAGCCTTTATGCCAATTATGCACTTAACTCTGTGTAGCCTGGTGATGTTTATCTGTTCA
GTTGCCCATTGGATAGTGCTGGTTTTAGTGTGCGCCCTGCCCCCCGTTAATGTGTGTGTTGACG
GCAAAGTCCTTTCGATAGTGCTGGTTTTAGTGTACTGCCTCCCCCCATTAATGTGTGTGTTGAT
GGCGAAGTCCTTGGATGGGGCCATGTGTGTGTTTGTGATGTTCCTCAAGTTGATGCAGCTTCTA
ACCTCTGTGAAAACACTGGTCAGAGTGGCTTCCCCAAGAGCTGGCAGCTCTGTGAACTAAAGCC
TGCAGCATTTCTGTTCTGGGACTGAATTCTGCCCGTGGGCCCGTCTTCCTGTAGTTGCCCGCTG
GTAGGAGAACAATGGGCGTGGGCGCTGTCCCTGGAAGCTGAACAGAAGGGGGCCTGTGGTTGGT
GGAAGCTGATGAGAGCCTGAGCTGGCGGTAAGAAGGAATCTCCCAGGGAGGTGGGAGAGACCTT
AAGGTGATGGCCAAGGCTGAGACTCCACCAGCACGAGAGGGAACGTGTGGGAACCGGCCCCTGC
TCTTGGTTCCTCTGCCTCAAAGTTGGGATCTGAAAGCCATGTTGGGCTATAAGACCCTGAGGCT
GTTCTCCCTTCTGTTCACAGTGAGGCTCTTAAGGCCAAGGCCAGCAGTTTTGAAGGGCTGACTG
GAAGGCCCGGGCCCTTCAGGGAGCTTCACGGAACTCAGGTTTCACTAGGGGTTCGGTCCCAGAT
CCAGACCCAGGGGTTTATAAAAATGGTGAGCTCTCCTTCCAGGTTTGGTTTAAATTACACATCC
AGGCCAGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCT
TGAGGTCAGAAGTTTGAGACCAGCCTGGCCAATGTGGTGAAACCCCGTCTCTTCCAAAAATACA
AAAATTCGCCAGGCATGGTGGCGCACACCTGTAATCCCAGCTACTTGGGAGGGTGAGGCAGGAG
AATCGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCT
GGGTGACAGAGCGAGACTCCATCTCAAAACAAAAACAAAAAAGTGACACATCCAGCTCCATCTC
CAGGTCATTGGAGATGTGCTATCTTGTCCTGCCTGTTTCTCATCAGCACAGGATCAAAGGATAA
AAATGCCGACAGCTTCTGAAGCCGGACTCAACAGTCTCACAGGCTCCTGACTTGTCACTTACTT
TTCTCCATCTCCCTCAACTGCACCCCATCCCTTTAGATCGTGCGTGTTTTAGTGACTGACACGC
TGCTGCCATCACCGTCCAAATACTCATTTATTTATTTATTCGAGAGGGGGAAAGCGGGTAGAGG
ATGGGATGTTTTGGAAGCACTTTGCAACTTGTCAGTATCTGAAAATCCCCTGCTGTTGCGGGGA
GAAGCTTTGAATGCACTGAAGAGAATCCCTTCTAAACGAAGGTGAGGGTAGTGTTCTTTCTCTA
AGTAAAGGGAAAGAAAAAAACGTAGGTTGCTTACCAGGTGGAGACAAGATTCAAGACATAGCAG
AAAAGTGGAAGACAAATATCTTCCACTTAAATGAGGCTGTTTTGACGTTCTCTGCCAAGGATTT
AGAGCTCTTGTTGAATTACCGTAGAAGAAACGCGAGTCTCAGTAGAGATGTTCTGTGTGTGCAG
CCTGTGCTCTGAACTGGCTTTCCACCTGCCGTGGTTCTTGCACAGCCTGGCAGTTCATTGTCAT
CTTTAATAAACTAAGGAAATGAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008007888	(Get FASTA)	NCBI Sequence Viewer
	XP_072879896	(Get FASTA)	NCBI Sequence Viewer
	XP_072879897	(Get FASTA)	NCBI Sequence Viewer
	XP_072879898	(Get FASTA)	NCBI Sequence Viewer
	XP_072879899	(Get FASTA)	NCBI Sequence Viewer
	XP_072879900	(Get FASTA)	NCBI Sequence Viewer
	XP_072879901	(Get FASTA)	NCBI Sequence Viewer
	XP_072879902	(Get FASTA)	NCBI Sequence Viewer
	XP_072879903	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000004736.1

RefSeq Acc Id:

XP_008007888 ⟸ XM_008009697

Ensembl Acc Id:

ENSCSAP00000004736 ⟸ ENSCSAT00000006532

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000008480	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000006532.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.900	UniProtKB/TrEMBL
InterPro	Autophagy_HostDef_Reg	UniProtKB/TrEMBL
	RUBC_PIKBD	UniProtKB/TrEMBL
	Run_dom	UniProtKB/TrEMBL
	Run_dom_sf	UniProtKB/TrEMBL
	Zf-RING_9	UniProtKB/TrEMBL
KEGG Report	csab:103242017	UniProtKB/TrEMBL
NCBI Gene	RUBCN	ENTREZGENE
PANTHER	PHOX (PX) DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	RUN DOMAIN BECLIN-1-INTERACTING AND CYSTEINE-RICH DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	RUBC_PIKBD	UniProtKB/TrEMBL
	RUN	UniProtKB/TrEMBL
	zf-RING_9	UniProtKB/TrEMBL
PROSITE	RUN	UniProtKB/TrEMBL
SMART	DUF4206	UniProtKB/TrEMBL
	RUN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF140741	UniProtKB/TrEMBL
UniProt	A0A0D9R7Z7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations