BBIP1 (BBSome interacting protein 1) - Rat Genome Database

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Gene: BBIP1 (BBSome interacting protein 1) Chlorocebus sabaeus
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Symbol: BBIP1
Name: BBSome interacting protein 1
RGD ID: 18401961
Description: INVOLVED IN eating behavior (ortholog); erythrocyte homeostasis (ortholog); gene expression (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome 1 (ortholog); Bardet-Biedl syndrome 18 (ortholog); Cornelia de Lange syndrome 3 (ortholog); FOUND IN BBSome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BBSome-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19103,836,389 - 103,857,028 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604865,041,564 - 65,062,681 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
BBSome  (IEA,ISO)
ciliary membrane  (IEA)
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BBIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19103,836,389 - 103,857,028 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604865,041,564 - 65,062,681 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
BBIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810110,898,730 - 110,919,366 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10110,898,730 - 110,919,201 (-)EnsemblGRCh38hg38GRCh38
GRCh3710112,658,488 - 112,679,124 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610112,647,496 - 112,669,114 (-)NCBINCBI36Build 36hg18NCBI36
Celera10106,390,095 - 106,410,721 (-)NCBICelera
Cytogenetic Map10q25.2NCBI
HuRef10106,287,345 - 106,307,970 (-)NCBIHuRef
CHM1_110112,940,312 - 112,960,941 (-)NCBICHM1_1
T2T-CHM13v2.010111,782,514 - 111,803,145 (-)NCBIT2T-CHM13v2.0
Bbip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391953,918,087 - 53,933,058 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1953,918,292 - 53,933,058 (-)EnsemblGRCm39 Ensembl
GRCm381953,929,656 - 53,944,627 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1953,929,861 - 53,944,627 (-)EnsemblGRCm38mm10GRCm38
MGSCv371954,001,731 - 54,019,117 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361954,005,024 - 54,018,950 (-)NCBIMGSCv36mm8
Celera1956,122,211 - 56,139,599 (-)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1948.8NCBI
Bbip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81262,950,459 - 262,964,410 (-)NCBIGRCr8
mRatBN7.21252,943,589 - 252,959,512 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1252,945,557 - 252,959,352 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1261,134,632 - 261,148,578 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01267,840,708 - 267,854,654 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01260,496,059 - 260,510,012 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01274,649,085 - 274,663,544 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1274,649,490 - 274,650,363 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01282,062,613 - 282,076,973 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1248,659,494 - 248,673,953 (-)NCBICelera
Cytogenetic Map1q55NCBI
Bbip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955485518,161 - 530,575 (+)NCBIChiLan1.0ChiLan1.0
BBIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28122,779,551 - 122,800,954 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110122,786,047 - 122,805,722 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010107,492,010 - 107,512,605 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110110,941,118 - 110,961,596 (-)NCBIpanpan1.1PanPan1.1panPan2
BBIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12822,227,965 - 22,242,471 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2822,227,968 - 22,241,316 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2822,380,050 - 22,394,595 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02822,752,514 - 22,767,077 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2822,752,517 - 22,767,025 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12822,311,738 - 22,326,280 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02822,318,522 - 22,333,068 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02822,452,692 - 22,467,248 (-)NCBIUU_Cfam_GSD_1.0
Bbip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721323,838,142 - 23,853,906 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364861,707,367 - 1,723,481 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BBIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14121,334,760 - 121,348,543 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114121,327,357 - 121,348,671 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214132,254,246 - 132,275,675 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Bbip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473735,401,932 - 35,414,093 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473735,401,223 - 35,413,228 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_007964083   ⟹   XP_007962274
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.19103,836,389 - 103,857,028 (-)NCBI
Vero_WHO_p1.0NW_02366604865,041,579 - 65,062,681 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964084   ⟹   XP_007962275
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.19103,836,389 - 103,856,757 (-)NCBI
Vero_WHO_p1.0NW_02366604865,041,572 - 65,062,681 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964085   ⟹   XP_007962276
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.19103,836,389 - 103,856,473 (-)NCBI
Vero_WHO_p1.0NW_02366604865,041,572 - 65,062,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964086   ⟹   XP_007962277
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.19103,836,389 - 103,855,857 (-)NCBI
Vero_WHO_p1.0NW_02366604865,041,564 - 65,061,507 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007962274 (Get FASTA)   NCBI Sequence Viewer  
  XP_007962275 (Get FASTA)   NCBI Sequence Viewer  
  XP_007962276 (Get FASTA)   NCBI Sequence Viewer  
  XP_007962277 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001471.1
RefSeq Acc Id: XP_007962274   ⟸   XM_007964083
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QYN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962275   ⟸   XM_007964084
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QYN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962276   ⟸   XM_007964085
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QYN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962277   ⟸   XM_007964086
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005150 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003183.1 UniProtKB/TrEMBL
InterPro BBIP10 UniProtKB/TrEMBL
NCBI Gene BBIP1 ENTREZGENE
PANTHER BBSOME-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  BBSOME-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
Pfam BBIP10 UniProtKB/TrEMBL
UniProt A0A0D9QYN2 ENTREZGENE, UniProtKB/TrEMBL