ERICH2 (glutamate rich 2) - Rat Genome Database

Name: ERICH2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: ERICH2 (glutamate rich 2) Chlorocebus sabaeus

Analyze

Symbol:

ERICH2

Name:

glutamate rich 2

RGD ID:

18401496

Description:

ASSOCIATED WITH split hand-foot malformation 5 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

glutamate-rich protein 2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ERICH2 (glutamate rich 2)	NCBI	Ortholog
Mus musculus (house mouse):	Erich2 (glutamate rich 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Erich2 (glutamate-rich 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Erich2 (glutamate rich 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ERICH2 (glutamate rich 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ERICH2 (glutamate rich 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Erich2 (glutamate rich 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ERICH2 (glutamate rich 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Erich2 (glutamate rich 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	56,303,403 - 56,332,439 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	143,213,697 - 143,241,437 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

split hand-foot malformation 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

ERICH2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	56,303,403 - 56,332,439 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	143,213,697 - 143,241,437 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

ERICH2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	170,770,378 - 170,798,977 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	170,766,878 - 170,798,977 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	171,626,888 - 171,655,487 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	171,344,401 - 171,363,727 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	165,257,006 - 165,272,201 (+)	NCBI		Celera
Cytogenetic Map	2	q31.1	NCBI
HuRef	2	163,516,676 - 163,544,640 (+)	NCBI		HuRef
CHM1_1	2	171,633,794 - 171,661,749 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	171,247,505 - 171,276,133 (+)	NCBI		T2T-CHM13v2.0

Erich2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	70,339,015 - 70,371,229 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	70,339,163 - 70,371,228 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	70,508,671 - 70,540,885 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	70,508,819 - 70,540,884 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	70,346,876 - 70,378,941 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	70,309,658 - 70,324,211 (+)	NCBI		MGSCv36	mm8
Celera	2	72,174,560 - 72,206,704 (+)	NCBI		Celera
Cytogenetic Map	2	C2	NCBI
cM Map	2	41.55	NCBI

Erich2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	75,718,573 - 75,755,447 (+)	NCBI		GRCr8
mRatBN7.2	3	55,310,993 - 55,347,701 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	55,310,993 - 55,347,184 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	58,711,488 - 58,752,043 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	67,295,083 - 67,335,632 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	65,057,780 - 65,098,327 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	56,801,387 - 56,839,435 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	56,802,714 - 56,838,918 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	63,587,169 - 63,588,046 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	3	63,420,589 - 63,457,427 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	52,730,732 - 52,766,847 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	54,867,941 - 54,904,403 (+)	NCBI		Celera
Cytogenetic Map	3	q22	NCBI

Erich2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	4,013,693 - 4,027,539 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955449	4,013,473 - 4,040,524 (-)	NCBI	ChiLan1.0	ChiLan1.0

ERICH2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	73,442,749 - 73,471,285 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	73,457,722 - 73,486,266 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	58,054,748 - 58,083,040 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	175,525,842 - 175,540,964 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	175,525,842 - 175,540,964 (+)	Ensembl	panpan1.1		panPan2

ERICH2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	15,297,073 - 15,333,824 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	15,296,369 - 15,333,817 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	15,310,482 - 15,346,858 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	15,421,873 - 15,458,722 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	15,427,571 - 15,458,715 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	15,510,742 - 15,547,569 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	15,498,983 - 15,535,560 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	15,610,014 - 15,647,082 (+)	NCBI		UU_Cfam_GSD_1.0

Erich2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	132,571,309 - 132,597,423 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936509	1,114,618 - 1,150,775 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ERICH2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	15	76,939,796 - 76,972,605 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	86,322,658 - 86,355,822 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Erich2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624787	8,249,170 - 8,293,529 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007965326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038001935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038001936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038001937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038001938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038001939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038001940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_007965326 ⟹ XP_007963517

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	10	56,303,403 - 56,332,439 (+)	NCBI
Vero_WHO_p1.0	NW_023666040	143,213,697 - 143,241,437 (-)	NCBI

Sequence:

show sequence

ACCCATCTCTCCCAACTCGAGACTTCTTTTTACTCCCCAAGTTTAAAACTCTGAGGCCACCCCG
CCCCCTTCCCTCTCCCTCGCTTAGAATCAGGTATGAACACCGACATTCCAACCCTCTTTCCTTC
TTCGGCGCTCCTGAAGGTAACCGGTGCGCGTGCGCACGTCAATCCGAGGGTGTGTCCGCCCAGT
TTCCGGCGCCGCGGGACACCCACGACCGCGGGGCTGTCCCTCAGCCCGGCCGCCCGCCCCGCCC
CGCCCCCCCGGACCCGCCTCCCAGCCCCGCCCCGGGCCCTCCTCGCCCCGCCCGCTCCGTCCCG
CGCCCTCCACCGCCCTCCGGCCTGGGCCCGCCTCCACCCAGCCTCTCCGTGGCTCCCTGGGCTG
CCCCCGCCTCCGCCCCCACCCCCGCCCCCTCCCCCGCCGTCGCCCNCATCCCCCAGCCCCCACC
CTCGGCTGCTGCCCGAGCTTCCTCCACACGCCGTGCAGTCTCCACGGCGACGCGGCGTCCCAGA
CTCGGAGCCCAGAGCCCAGCGCGAGCAGCTAGCCGGGCTGGCTCTTGGTGTCTGCCCTTCGGAT
GGTCGGCTGGAGAGAGCCGCCAGCTGGACTTCTGTAGACAAGACAGATACTGTAAAGACAGCAA
AGAACAGACAGAATGGCAGATTGCTAATGTCTGATCCAAAGGAAAAAGTGACGATTGAATCAAA
TGAAGCAATGTCAGATAAATGTCTCCTTGGACACAGACCAAGATTGACAAGCAAACTTAATACA
CCACCAACACAGATCTCTCTAAATGTAGCTAAGACATTCTCAGAAAAGAAGGAAGTCCCTTCTA
AGAATATTGAAAATAAAGTCTCTTTAAAGAATATTGAAAATAGAGTATCTTCAAGGAGTATCGA
AAGTAAAGATATCTTAACAAATCTACAGTCTGACCTGCTGTCATCTTCCTGCTTAAAAGAAAGC
ACAGGTGAAGTGAGCAAAGATGCAGTCATTGTAAAGCAGGAGAAAAATAATGAATATTGCCTTC
AGGATATTGATGATAAGTTGTCAGAATCAGCAGAGGATGATGATGAAGATGATACCAATGATGA
AGATAATGATGAAGATAGTAACCCTAAAAAGAATACTCAGGCCCCACTAGAGTTAATGGCAGAA
TTCCTGAGAGCAGAAATGGCCCGAGAGTACCAGTTGGCAAAAAAATTATGTCAGATGATCCTCA
TCTATGAACCAGAAAATCCTGAGGCCAAGGAGTTTTTCACACTTATTGAAGAAATGTTGCTGAT
GGAGAAAACTCAGAATCGTGAGCAAGATGGTGAAGACAGTGATGAAGACAGCAGTGGTGAGAGT
AAAGGAGAAAGCGATGAGGAGCTGAGTGACAAGAGCTCTGATGAGGGTGAAGATGGATCATGAG
TGTTGCTGCGATACTTAAAGCTTCATGTATTTTCATTAATGTATACCATGCAAATATAAAGACG
AGAGTGGCATTTTA

hide sequence

RefSeq Acc Id:

XM_038001935 ⟹ XP_037857863

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	143,213,697 - 143,241,437 (-)	NCBI

RefSeq Acc Id:

XM_038001936 ⟹ XP_037857864

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	143,213,697 - 143,240,799 (-)	NCBI

RefSeq Acc Id:

XM_038001937 ⟹ XP_037857865

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	143,213,697 - 143,241,437 (-)	NCBI

RefSeq Acc Id:

XM_038001938 ⟹ XP_037857866

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	143,213,697 - 143,240,524 (-)	NCBI

RefSeq Acc Id:

XM_038001939 ⟹ XP_037857867

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	143,213,697 - 143,240,758 (-)	NCBI

RefSeq Acc Id:

XM_038001940 ⟹ XP_037857868

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	143,213,697 - 143,241,437 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007963517	(Get FASTA)	NCBI Sequence Viewer
	XP_037857863	(Get FASTA)	NCBI Sequence Viewer
	XP_037857864	(Get FASTA)	NCBI Sequence Viewer
	XP_037857865	(Get FASTA)	NCBI Sequence Viewer
	XP_037857866	(Get FASTA)	NCBI Sequence Viewer
	XP_037857867	(Get FASTA)	NCBI Sequence Viewer
	XP_037857868	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_007963517 ⟸ XM_007965326
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_037857868 ⟸ XM_038001940
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_037857863 ⟸ XM_038001935
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_037857865 ⟸ XM_038001937
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_037857864 ⟸ XM_038001936
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_037857867 ⟸ XM_038001939
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_037857866 ⟸ XM_038001938
- Peptide Label:	isoform X5

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	ERICH2	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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