GPR78 (G protein-coupled receptor 78) - Rat Genome Database

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Pathways
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Gene: GPR78 (G protein-coupled receptor 78) Chlorocebus sabaeus
Analyze
Symbol: GPR78
Name: G protein-coupled receptor 78
RGD ID: 18399999
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (inferred); G protein-coupled receptor signaling pathway (inferred); signal transduction (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G-protein coupled receptor 78
RGD Orthologs
Human
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12744,505,069 - 44,512,360 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2744,505,486 - 44,511,935 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666051830,608 - 837,890 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GPR78
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12744,505,069 - 44,512,360 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2744,505,486 - 44,511,935 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666051830,608 - 837,890 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GPR78
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3848,580,392 - 8,590,023 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl48,558,725 - 8,619,761 (+)EnsemblGRCh38hg38GRCh38
GRCh3748,582,119 - 8,591,750 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3648,633,191 - 8,640,420 (+)NCBINCBI36Build 36hg18NCBI36
Build 3448,700,361 - 8,707,589NCBI
Celera48,475,095 - 8,482,325 (+)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef48,501,369 - 8,511,155 (+)NCBIHuRef
CHM1_148,580,198 - 8,589,988 (+)NCBICHM1_1
T2T-CHM13v2.048,560,253 - 8,569,884 (+)NCBIT2T-CHM13v2.0
GPR78
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v238,866,357 - 8,877,039 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan148,793,716 - 8,804,250 (+)NCBINHGRI_mPanPan1
PanPan1.148,644,644 - 8,654,212 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl48,644,687 - 8,654,267 (+)Ensemblpanpan1.1panPan2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system nervous system
High
Medium
Low 10
Below cutoff 7 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008018024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000014057   ⟹   ENSCSAP00000012038
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2744,505,486 - 44,511,935 (+)Ensembl
RefSeq Acc Id: XM_008018024   ⟹   XP_008016215
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12744,505,069 - 44,512,360 (+)NCBI
Vero_WHO_p1.0NW_023666051830,608 - 837,890 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008016215 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012038.1
Reference Protein Sequences
RefSeq Acc Id: XP_008016215   ⟸   XM_008018024
- UniProtKB: A0A0D9RTU9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000012038   ⟸   ENSCSAT00000014057


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015965 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014057.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  GPR26/78-like UniProtKB/TrEMBL
KEGG Report csab:103246434 UniProtKB/TrEMBL
NCBI Gene GPR78 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTOR 78 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0D9RTU9 ENTREZGENE, UniProtKB/TrEMBL