WDR49 (WD repeat domain 49) - Rat Genome Database

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Gene: WDR49 (WD repeat domain 49) Chlorocebus sabaeus
Analyze
Symbol: WDR49
Name: WD repeat domain 49
RGD ID: 18398933
Description: ASSOCIATED WITH genetic disease (ortholog); prostate cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 49
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11521,778,500 - 21,967,551 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606330,623,067 - 30,807,150 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
WDR49
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11521,778,500 - 21,967,551 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606330,623,067 - 30,807,150 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
WDR49
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383167,478,684 - 167,657,923 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3167,478,684 - 167,653,983 (-)EnsemblGRCh38hg38GRCh38
GRCh373167,196,472 - 167,375,711 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363168,679,166 - 168,853,983 (-)NCBINCBI36Build 36hg18NCBI36
Build 343168,679,173 - 168,853,991NCBI
Celera3165,595,023 - 165,769,739 (-)NCBICelera
Cytogenetic Map3q26.1NCBI
HuRef3164,566,706 - 164,741,365 (-)NCBIHuRef
CHM1_13167,158,739 - 167,333,549 (-)NCBICHM1_1
T2T-CHM13v2.03170,262,569 - 170,441,822 (-)NCBIT2T-CHM13v2.0
Wdr49
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39375,181,235 - 75,389,472 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl375,182,295 - 75,389,463 (-)EnsemblGRCm39 Ensembl
GRCm38375,273,928 - 75,482,165 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl375,274,988 - 75,482,156 (-)EnsemblGRCm38mm10GRCm38
MGSCv37375,078,910 - 75,255,686 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36375,360,914 - 75,567,616 (-)NCBIMGSCv36mm8
Celera375,356,332 - 75,546,887 (-)NCBICelera
Cytogenetic Map3E3NCBI
cM Map333.75NCBI
Wdr49
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82162,349,030 - 162,563,117 (-)NCBIGRCr8
mRatBN7.22160,049,478 - 160,264,581 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2160,051,458 - 160,264,511 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02173,675,780 - 173,800,840 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2173,676,089 - 173,836,854 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02193,009,340 - 193,219,850 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42166,141,360 - 166,318,378 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2154,257,377 - 154,384,526 (-)NCBICelera
Cytogenetic Map2q32NCBI
Wdr49
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544816,701,241 - 16,840,180 (-)NCBIChiLan1.0ChiLan1.0
WDR49
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22165,372,262 - 165,554,324 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13165,376,989 - 165,559,050 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03164,492,444 - 164,679,218 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13172,550,188 - 172,731,283 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3172,550,015 - 172,730,794 (-)Ensemblpanpan1.1panPan2
WDR49
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13432,362,006 - 32,490,180 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3432,363,257 - 32,489,588 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3441,437,883 - 41,571,373 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03432,444,588 - 32,569,304 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3432,442,421 - 32,569,582 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13432,380,958 - 32,514,511 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03432,350,111 - 32,474,970 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03432,613,027 - 32,746,637 (-)NCBIUU_Cfam_GSD_1.0
Wdr49
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560298,769,467 - 98,904,900 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365934,717,043 - 4,851,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR49
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13106,348,219 - 106,492,808 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113106,348,216 - 106,492,792 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213114,910,270 - 115,069,959 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Wdr49
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473045,450,817 - 45,630,205 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_037988593   ⟹   XP_037844521
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606330,623,067 - 30,807,150 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037844521 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_037844521   ⟸   XM_037988593


Additional Information

Database Acc Id Source(s)
NCBI Gene WDR49 ENTREZGENE