B3GNT9 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9) - Rat Genome Database

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Gene: B3GNT9 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9) Chlorocebus sabaeus
Analyze
Symbol: B3GNT9
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
RGD ID: 18398081
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); hexosyltransferase activity (inferred); UDP-glycosyltransferase activity (inferred); INVOLVED IN carbohydrate derivative biosynthetic process (inferred); protein glycosylation (inferred); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); cataract 5 multiple types (ortholog); genetic disease (ortholog); FOUND IN endomembrane system (inferred); Golgi apparatus (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,305,875 - 60,309,264 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,306,893 - 60,308,101 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604723,057,772 - 23,061,392 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B3GNT9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,305,875 - 60,309,264 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,306,893 - 60,308,101 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604723,057,772 - 23,061,392 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3GNT9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,148,104 - 67,150,998 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,148,104 - 67,150,998 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,182,007 - 67,184,901 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,739,506 - 65,742,403 (-)NCBINCBI36Build 36hg18NCBI36
Celera1651,690,248 - 51,693,145 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,055,522 - 53,058,419 (-)NCBIHuRef
CHM1_11668,589,324 - 68,592,221 (-)NCBICHM1_1
T2T-CHM13v2.01672,942,396 - 72,945,290 (-)NCBIT2T-CHM13v2.0
B3gnt9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,979,270 - 105,981,895 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8105,979,270 - 105,981,785 (-)EnsemblGRCm39 Ensembl
GRCm388105,252,638 - 105,255,250 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,252,638 - 105,255,153 (-)EnsemblGRCm38mm10GRCm38
MGSCv378107,776,538 - 107,779,051 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,141,768 - 108,144,282 (-)NCBIMGSCv36mm8
Celera8109,475,421 - 109,477,934 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
B3gnt9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,039,649 - 50,042,206 (-)NCBIGRCr8
mRatBN7.21933,129,740 - 33,134,048 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,128,142 - 33,132,344 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1939,944,667 - 39,947,224 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,598,575 - 40,601,132 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01942,888,235 - 42,890,792 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,208,061 - 37,212,400 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,208,825 - 37,210,412 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,073,878 - 48,077,216 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,067,447 - 35,068,901 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,072,327 - 35,073,782 (-)NCBI
Celera1932,558,918 - 32,560,795 (-)NCBICelera
Cytogenetic Map19q11NCBI
B3gnt9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554849,462,517 - 9,467,314 (+)NCBIChiLan1.0ChiLan1.0
B3GNT9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,677,877 - 76,681,033 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,590,706 - 82,596,387 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,493,804 - 47,497,908 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11666,882,780 - 66,885,891 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,883,954 - 66,885,162 (-)Ensemblpanpan1.1panPan2
B3GNT9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,212,940 - 82,215,918 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,212,922 - 82,214,679 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha582,201,546 - 82,204,552 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,647,250 - 82,650,254 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,647,255 - 82,650,527 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,473,319 - 82,476,321 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0582,158,688 - 82,161,653 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,798,151 - 82,801,155 (+)NCBIUU_Cfam_GSD_1.0
B3gnt9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,958,270 - 41,965,471 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,624,842 - 17,626,050 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,624,327 - 17,627,944 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,792,134 - 27,795,361 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,791,387 - 27,797,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
B3gnt9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474619,165,895 - 19,170,539 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system
High
Medium
Low 2
Below cutoff 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007994016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000018564   ⟹   ENSCSAP00000018013
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl560,306,893 - 60,308,101 (+)Ensembl
RefSeq Acc Id: XM_007994016   ⟹   XP_007992207
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1560,305,875 - 60,309,264 (+)NCBI
Vero_WHO_p1.0NW_02366604723,057,772 - 23,061,392 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007992207 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018013
  ENSCSAP00000018013.1
Reference Protein Sequences
RefSeq Acc Id: XP_007992207   ⟸   XM_007994016
- UniProtKB: A0A0D9SAX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018013   ⟸   ENSCSAT00000018564


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018474 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018564.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
NCBI Gene B3GNT9 ENTREZGENE
PANTHER PTHR11214 UniProtKB/TrEMBL
  UDP-GLCNAC:BETAGAL BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 9 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt A0A0D9SAX4 ENTREZGENE, UniProtKB/TrEMBL