STMN3 (stathmin 3) - Rat Genome Database

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Gene: STMN3 (stathmin 3) Chlorocebus sabaeus
Analyze
Symbol: STMN3
Name: stathmin 3
RGD ID: 18398064
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); cellular response to nerve growth factor stimulus (ortholog); cytoplasmic microtubule organization (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); autosomal recessive dyskeratosis congenita 5 (ortholog); benign familial infantile seizures 6 (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: stathmin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12567,440 - 584,080 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2573,912 - 584,276 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605048,128,051 - 48,141,375 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
STMN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12567,440 - 584,080 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2573,912 - 584,276 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605048,128,051 - 48,141,375 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
STMN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,639,712 - 63,653,424 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,639,705 - 63,657,682 (-)EnsemblGRCh38hg38GRCh38
GRCh372062,271,065 - 62,284,777 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,741,505 - 61,755,224 (-)NCBINCBI36Build 36hg18NCBI36
Build 342061,741,504 - 61,755,224NCBI
Celera2058,951,675 - 58,965,521 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2059,001,022 - 59,018,614 (-)NCBIHuRef
CHM1_12062,172,106 - 62,186,629 (-)NCBICHM1_1
T2T-CHM13v2.02065,453,599 - 65,467,540 (-)NCBIT2T-CHM13v2.0
Stmn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,948,252 - 180,956,293 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,948,252 - 180,956,293 (-)EnsemblGRCm39 Ensembl
GRCm382181,306,459 - 181,314,500 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,306,459 - 181,314,500 (-)EnsemblGRCm38mm10GRCm38
MGSCv372181,041,164 - 181,049,205 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362181,235,866 - 181,243,907 (-)NCBIMGSCv36mm8
Celera2185,389,152 - 185,397,193 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.63NCBI
Stmn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,794,358 - 188,802,494 (-)NCBIGRCr8
mRatBN7.23168,416,810 - 168,424,946 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,416,810 - 168,425,056 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,797,424 - 172,805,557 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,756,524 - 181,764,657 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,417,755 - 178,425,891 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,808,016 - 176,816,108 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,808,017 - 176,816,162 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,518,142 - 180,526,234 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,446,808 - 170,454,900 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13170,352,844 - 170,359,534 (-)NCBI
Celera3164,161,529 - 164,169,621 (+)NCBICelera
Cytogenetic Map3q43NCBI
Stmn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528577,536 - 583,850 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955528577,536 - 583,850 (+)NCBIChiLan1.0ChiLan1.0
STMN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,444,778 - 69,457,030 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,436,785 - 69,449,037 (-)NCBINHGRI_mPanPan1
PanPan1.12061,567,262 - 61,580,178 (-)NCBIpanpan1.1PanPan1.1panPan2
STMN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,209,738 - 47,220,146 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,209,784 - 47,219,472 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.02448,348,857 - 48,359,203 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12447,193,781 - 47,204,121 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,318,649 - 47,328,993 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02448,056,725 - 48,067,074 (-)NCBIUU_Cfam_GSD_1.0
Stmn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,456,801 - 195,481,831 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,906,732 - 10,912,960 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,910,444 - 10,914,676 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STMN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,600,455 - 62,609,018 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,600,450 - 62,609,851 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Stmn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,292,076 - 29,299,621 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,292,321 - 29,299,623 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 20 60
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000014527   ⟹   ENSCSAP00000012499
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2573,912 - 584,276 (+)Ensembl
RefSeq Acc Id: XM_037983042   ⟹   XP_037838970
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605048,128,620 - 48,141,375 (+)NCBI
RefSeq Acc Id: XM_037983043   ⟹   XP_037838971
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605048,128,051 - 48,141,375 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037838970 (Get FASTA)   NCBI Sequence Viewer  
  XP_037838971 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012499.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000012499   ⟸   ENSCSAT00000014527
RefSeq Acc Id: XP_037838971   ⟸   XM_037983043
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RV60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037838970   ⟸   XM_037983042
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RV60 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016432 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014527.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.280.30 UniProtKB/TrEMBL
InterPro Stathmin_CS UniProtKB/TrEMBL
  Stathmin_fam UniProtKB/TrEMBL
  Stathmin_sf UniProtKB/TrEMBL
NCBI Gene STMN3 ENTREZGENE
PANTHER PTHR10104 UniProtKB/TrEMBL
  PTHR10104:SF17 UniProtKB/TrEMBL
Pfam Stathmin UniProtKB/TrEMBL
PIRSF Stathmin UniProtKB/TrEMBL
PRINTS STATHMIN UniProtKB/TrEMBL
PROSITE STATHMIN_1 UniProtKB/TrEMBL
  STATHMIN_2 UniProtKB/TrEMBL
  STATHMIN_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF101494 UniProtKB/TrEMBL
UniProt A0A0D9RV60 ENTREZGENE, UniProtKB/TrEMBL