HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0) - Rat Genome Database
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Gene: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0) Chlorocebus sabaeus
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Symbol: HNRNPA0
Name: heterogeneous nuclear ribonucleoprotein A0
RGD ID: 18395926
Description: ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); protein kinase binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); inflammatory response (ortholog); response to lipopolysaccharide (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH gastric adenocarcinoma (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12340,433,429 - 40,436,188 (-)NCBI
ChlSab1.1 Ensembl2340,435,002 - 40,435,913 (-)Ensembl
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
HNRNPA0
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12340,433,429 - 40,436,188 (-)NCBI
ChlSab1.1 Ensembl2340,435,002 - 40,435,913 (-)Ensembl
HNRNPA0
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5137,745,651 - 137,754,363 (-)EnsemblGRCh38hg38GRCh38
GRCh385137,745,651 - 137,754,363 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh375137,087,073 - 137,090,039 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,114,972 - 137,117,938 (-)NCBINCBI36hg18NCBI36
Build 345137,114,973 - 137,117,938NCBI
Celera5133,208,508 - 133,211,474 (-)NCBI
Cytogenetic Map5q31.2NCBI
HuRef5132,277,733 - 132,280,699 (-)NCBIHuRef
CHM1_15136,519,671 - 136,522,637 (-)NCBICHM1_1
Hnrnpa0
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,273,693 - 58,276,370 (-)NCBIGRCm39mm39
GRCm381358,125,879 - 58,128,556 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,125,879 - 58,128,556 (-)EnsemblGRCm38mm10GRCm38
MGSCv371358,227,240 - 58,229,917 (-)NCBIGRCm37mm9NCBIm37
MGSCv361358,135,497 - 58,138,179 (-)NCBImm8
Celera1359,188,312 - 59,191,005 (-)NCBICelera
Cytogenetic Map13B1NCBI
Hnrnpa0
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.41712,452,030 - 12,452,914 (+)NCBIRGSC3.4rn4RGSC3.4
Celera176,617,417 - 6,618,097 (+)NCBICelera
Cytogenetic Map17p14NCBI
Hnrnpa0
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540832,718,736 - 32,719,409 (-)NCBIChiLan1.0ChiLan1.0
HNRNPA0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15139,275,249 - 139,278,250 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,277,004 - 139,277,939 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05133,132,030 - 133,140,771 (-)NCBIMhudiblu_PPA_v0panPan3
HNRNPA0
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1125,466,185 - 25,467,117 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11125,464,601 - 25,467,460 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Hnrnpa0
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365974,712,201 - 4,714,949 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPA0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2139,779,867 - 139,783,159 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12139,779,865 - 139,783,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,501,462 - 145,504,543 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Hnrnpa0
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247339,265,784 - 9,271,559 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 11 60
Low 9
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008014552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000018036   ⟹   ENSCSAP00000017505
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2340,435,002 - 40,435,913 (-)Ensembl
RefSeq Acc Id: XM_008014552   ⟹   XP_008012743
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.12340,433,429 - 40,436,188 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008012743 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008012743   ⟸   XM_008014552
- UniProtKB: A0A0D9S9G6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000017505   ⟸   ENSCSAT00000018036


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000499 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCSAP00000017505 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018036 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro hnRNPA0_RRM1 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report csab:103244601 UniProtKB/TrEMBL
NCBI Gene HNRNPA0 ENTREZGENE
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0D9S9G6 ENTREZGENE, UniProtKB/TrEMBL