KIAA1549 (KIAA1549 ortholog) - Rat Genome Database

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Gene: KIAA1549 (KIAA1549 ortholog) Chlorocebus sabaeus
Analyze
Symbol: KIAA1549
Name: KIAA1549 ortholog (Ensembl:KIAA1549)
RGD ID: 18394955
Description: ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); malignant astrocytoma (ortholog); FOUND IN membrane (inferred); photoreceptor connecting cilium (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UPF0606 protein KIAA1549 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121107,542,927 - 107,690,278 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21107,544,023 - 107,630,030 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660724,387,492 - 4,530,444 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
KIAA1549
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121107,542,927 - 107,690,278 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21107,544,023 - 107,630,030 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660724,387,492 - 4,530,444 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
KIAA1549
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387138,831,381 - 138,981,389 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7138,831,381 - 138,981,389 (-)EnsemblGRCh38hg38GRCh38
GRCh377138,516,126 - 138,666,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367138,166,666 - 138,255,110 (-)NCBINCBI36Build 36hg18NCBI36
Celera7133,253,929 - 133,358,429 (-)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7132,827,041 - 132,976,940 (-)NCBIHuRef
CHM1_17138,449,918 - 138,599,747 (-)NCBICHM1_1
T2T-CHM13v2.07140,144,273 - 140,294,292 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27137,860,328 - 138,010,282 (-)NCBI
D630045J12Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,100,109 - 38,231,074 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,100,109 - 38,230,944 (-)EnsemblGRCm39 Ensembl
GRCm38638,123,174 - 38,254,139 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,123,174 - 38,254,009 (-)EnsemblGRCm38mm10GRCm38
MGSCv37638,073,174 - 38,204,009 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36638,052,782 - 38,183,617 (-)NCBIMGSCv36mm8
Celera638,103,523 - 38,183,414 (-)NCBICelera
Cytogenetic Map6B1NCBI
cM Map617.68NCBI
Kiaa1549
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8467,807,635 - 67,935,303 (-)NCBIGRCr8
mRatBN7.2466,840,674 - 66,968,407 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl466,760,162 - 66,968,436 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0465,834,933 - 65,962,722 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl465,834,035 - 65,962,539 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0465,652,234 - 65,777,877 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4465,674,877 - 65,797,307 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1465,958,233 - 66,073,437 (-)NCBI
Celera461,864,942 - 61,989,522 (-)NCBICelera
Cytogenetic Map4q23NCBI
Kiaa1549
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554944,068,854 - 4,147,102 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554944,067,813 - 4,152,368 (+)NCBIChiLan1.0ChiLan1.0
KIAA1549
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26175,644,772 - 175,795,235 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1727,655,024 - 27,805,434 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07130,790,115 - 130,940,250 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17143,282,718 - 143,427,400 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7143,283,947 - 143,427,404 (-)Ensemblpanpan1.1panPan2
KIAA1549
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,681,889 - 9,839,844 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl169,696,913 - 9,834,548 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1610,536,461 - 10,681,133 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,614,808 - 9,759,762 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,616,439 - 9,754,908 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1169,563,620 - 9,708,508 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0169,407,177 - 9,551,572 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,480,266 - 9,625,010 (+)NCBIUU_Cfam_GSD_1.0
Kiaa1549
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511816,003,298 - 16,093,386 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365923,132,703 - 3,275,199 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365923,132,166 - 3,215,835 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA1549
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1810,675,328 - 10,829,360 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11810,676,845 - 10,829,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21811,119,961 - 11,295,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Kiaa1549
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476519,277,147 - 19,440,207 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476519,251,748 - 19,441,120 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 4 30
Low 32 18 30
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000006709   ⟹   ENSCSAP00000004909
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl21107,544,023 - 107,630,030 (-)Ensembl
RefSeq Acc Id: XM_037991146   ⟹   XP_037847074
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660724,387,546 - 4,530,444 (-)NCBI
RefSeq Acc Id: XM_037991147   ⟹   XP_037847075
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660724,387,546 - 4,530,444 (-)NCBI
RefSeq Acc Id: XR_005238154
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660724,387,492 - 4,530,444 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037847074 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847075 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004909.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000004909   ⟸   ENSCSAT00000006709
RefSeq Acc Id: XP_037847075   ⟸   XM_037991147
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R8H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037847074   ⟸   XM_037991146
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R8H0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008679 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006709.1 UniProtKB/TrEMBL
InterPro DUF3827 UniProtKB/TrEMBL
NCBI Gene KIAA1549 ENTREZGENE
PANTHER PTHR21590 UniProtKB/TrEMBL
  UPF0606 PROTEIN KIAA1549 UniProtKB/TrEMBL
Pfam DUF3827 UniProtKB/TrEMBL
UniProt A0A0D9R8H0 ENTREZGENE, UniProtKB/TrEMBL