TUT1 (terminal uridylyl transferase 1, U6 snRNA-specific) - Rat Genome Database

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Gene: TUT1 (terminal uridylyl transferase 1, U6 snRNA-specific) Chlorocebus sabaeus
Analyze
Symbol: TUT1
Name: terminal uridylyl transferase 1, U6 snRNA-specific
RGD ID: 18389359
Description: ENCODES a protein that exhibits enzyme binding (inferred); enzyme-substrate adaptor activity (inferred); metal ion binding (inferred); INVOLVED IN histone mRNA catabolic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN mRNA cleavage and polyadenylation specificity factor complex (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: speckle targeted PIP5K1A-regulated poly(A) polymerase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,313,208 - 11,325,912 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,312,843 - 11,326,777 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,648,848 - 108,664,259 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TUT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,313,208 - 11,325,912 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,312,843 - 11,326,777 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,648,848 - 108,664,259 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TUT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,575,052 - 62,591,523 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,575,045 - 62,591,637 (-)EnsemblGRCh38hg38GRCh38
GRCh371162,342,524 - 62,358,995 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,099,096 - 62,115,592 (-)NCBINCBI36Build 36hg18NCBI36
Build 341162,099,096 - 62,115,592NCBI
Celera1159,671,911 - 59,688,674 (-)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,671,464 - 58,688,025 (-)NCBIHuRef
CHM1_11162,225,562 - 62,242,155 (-)NCBICHM1_1
T2T-CHM13v2.01162,564,505 - 62,580,971 (-)NCBIT2T-CHM13v2.0
Tut1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,931,199 - 8,943,572 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,931,211 - 8,943,574 (+)EnsemblGRCm39 Ensembl
GRCm38198,953,832 - 8,966,210 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,953,847 - 8,966,210 (+)EnsemblGRCm38mm10GRCm38
MGSCv37199,028,340 - 9,040,700 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36199,020,892 - 9,033,255 (+)NCBIMGSCv36mm8
Celera198,714,449 - 8,726,831 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map196.04NCBI
Tut1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,277,802 - 215,288,869 (+)NCBIGRCr8
mRatBN7.21205,848,691 - 205,859,767 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1205,848,772 - 205,859,764 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,257,244 - 214,268,332 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,292,151 - 221,303,134 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01213,985,008 - 213,995,991 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01225,151,462 - 225,162,445 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,151,404 - 225,162,595 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,088,997 - 232,100,065 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,629,025 - 211,640,008 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1203,361,578 - 203,372,574 (+)NCBICelera
Cytogenetic Map1q43NCBI
Tut1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599596,650 - 606,486 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955599596,565 - 606,498 (+)NCBIChiLan1.0ChiLan1.0
TUT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,801,920 - 63,819,095 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,844,628 - 64,861,803 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,932,582 - 57,949,473 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,287,375 - 61,303,784 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,287,375 - 61,303,784 (-)Ensemblpanpan1.1panPan2
TUT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11854,048,519 - 54,061,431 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1854,048,563 - 54,061,415 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,653,541 - 52,666,455 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01855,100,852 - 55,112,992 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1855,100,856 - 55,126,764 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11854,197,090 - 54,210,000 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,771,809 - 53,783,676 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,567,401 - 54,580,143 (+)NCBIUU_Cfam_GSD_1.0
Eef1g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,566,720 - 10,577,626 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581665,782 - 679,190 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936581665,751 - 691,448 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,148,560 - 9,161,905 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,148,563 - 9,161,918 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,494,206 - 8,506,620 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tut1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249261,112,309 - 1,123,959 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249261,113,331 - 1,123,930 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000004605   ⟹   ENSCSAP00000002851
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl111,312,843 - 11,326,777 (+)Ensembl
RefSeq Acc Id: XM_037999199   ⟹   XP_037855127
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038108,648,848 - 108,664,259 (+)NCBI
RefSeq Acc Id: XM_037999200   ⟹   XP_037855128
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038108,648,868 - 108,664,259 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037855127 (Get FASTA)   NCBI Sequence Viewer  
  XP_037855128 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002851.1
Ensembl Acc Id: ENSCSAP00000002851   ⟸   ENSCSAT00000004605
RefSeq Acc Id: XP_037855127   ⟸   XM_037999199
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R2L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855128   ⟸   XM_037999200
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R2L2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006566 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004605.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.10 UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/TrEMBL
InterPro MTPAP-like_central UniProtKB/TrEMBL
  NT_sf UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
NCBI Gene TUT1 ENTREZGENE
PANTHER POLY A POLYMERASE CID PAP -RELATED UniProtKB/TrEMBL
  SPECKLE TARGETED PIP5K1A-REGULATED POLY(A) POLYMERASE UniProtKB/TrEMBL
Pfam MTPAP-like_central UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
Superfamily-SCOP PAP/OAS1 substrate-binding domain UniProtKB/TrEMBL
  SSF81301 UniProtKB/TrEMBL
UniProt A0A0D9R2L2 ENTREZGENE, UniProtKB/TrEMBL