RAB25 (RAB25, member RAS oncogene family) - Rat Genome Database

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Gene: RAB25 (RAB25, member RAS oncogene family) Chlorocebus sabaeus
Analyze
Symbol: RAB25
Name: RAB25, member RAS oncogene family
RGD ID: 18386532
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); myosin V binding (inferred); INVOLVED IN epithelial cell morphogenesis (inferred); exocytosis (inferred); positive regulation of cell population proliferation (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic vesicle (inferred); Golgi apparatus (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-25
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,794,890 - 7,804,528 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,794,884 - 7,804,246 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660387,090,927 - 7,100,344 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAB25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,794,890 - 7,804,528 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,794,884 - 7,804,246 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660387,090,927 - 7,100,344 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RAB25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,061,160 - 156,070,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,061,160 - 156,070,504 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,030,951 - 156,040,295 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,297,590 - 154,306,919 (+)NCBINCBI36Build 36hg18NCBI36
Build 341152,844,054 - 152,853,321NCBI
Celera1129,104,027 - 129,113,356 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,393,546 - 127,402,815 (+)NCBIHuRef
CHM1_11157,427,055 - 157,436,403 (+)NCBICHM1_1
T2T-CHM13v2.01155,199,625 - 155,208,969 (+)NCBIT2T-CHM13v2.0
Rab25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,449,335 - 88,455,586 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,449,336 - 88,455,607 (-)EnsemblGRCm39 Ensembl
GRCm38388,542,029 - 88,548,279 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,542,029 - 88,548,300 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,345,951 - 88,352,201 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,627,956 - 88,634,206 (-)NCBIMGSCv36mm8
Celera388,581,833 - 88,588,086 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.87NCBI
Rab25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,298,124 - 176,304,221 (-)NCBIGRCr8
mRatBN7.22174,000,323 - 174,006,422 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,000,323 - 174,006,422 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,144,466 - 181,150,556 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,166,830 - 179,172,920 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,766,914 - 173,773,011 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,903,301 - 187,909,398 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,903,307 - 187,909,394 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,305,701 - 207,311,798 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,657,125 - 180,663,222 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,607,238 - 180,613,101 (-)NCBI
Celera2167,944,713 - 167,950,810 (-)NCBICelera
Cytogenetic Map2q34NCBI
Rab25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,242,944 - 2,252,840 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,243,237 - 2,250,507 (+)NCBIChiLan1.0ChiLan1.0
RAB25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,775,723 - 93,787,656 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,507,670 - 93,519,472 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,403,058 - 131,412,722 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,232,548 - 135,241,732 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,232,544 - 135,241,732 (+)Ensemblpanpan1.1panPan2
RAB25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,752,975 - 41,758,954 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,752,975 - 41,758,906 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,242,503 - 41,248,434 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,619,537 - 41,625,449 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,619,537 - 41,625,449 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,400,370 - 41,406,300 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,453,730 - 41,459,642 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,738,146 - 41,744,077 (-)NCBIUU_Cfam_GSD_1.0
Rab25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,290,971 - 26,298,873 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,321,860 - 5,329,270 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,321,394 - 5,329,256 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,961,148 - 93,970,712 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,961,136 - 93,970,742 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,703,914 - 102,713,526 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Rab25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,404,845 - 1,411,627 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,404,922 - 1,411,427 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 16 16
Low 4 14 4
Below cutoff 6 19

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007976794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000000114   ⟹   ENSCSAP00000015938
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl207,794,884 - 7,804,246 (-)Ensembl
RefSeq Acc Id: XM_007976794   ⟹   XP_007974985
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1207,794,890 - 7,804,528 (-)NCBI
Vero_WHO_p1.0NW_0236660387,090,927 - 7,100,344 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007974985 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015938
  ENSCSAP00000015938.1
RefSeq Acc Id: XP_007974985   ⟸   XM_007976794
- UniProtKB: A0A0D9S4Z9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000015938   ⟸   ENSCSAT00000000114


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002096 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000114.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report csab:103223860 UniProtKB/TrEMBL
NCBI Gene RAB25 ENTREZGENE
PANTHER DRAB11-RELATED UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-25 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9S4Z9 ENTREZGENE, UniProtKB/TrEMBL