SRI (sorcin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SRI (sorcin) Chlorocebus sabaeus
Analyze
Symbol: SRI
Name: sorcin
RGD ID: 18382988
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN calcium ion transport (ortholog); cytoplasmic sequestering of transcription factor (ortholog); heart development (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); congestive heart failure (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); dendritic spine neck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12160,730,164 - 60,751,054 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2160,730,051 - 60,749,678 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604243,353,983 - 43,369,330 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SRI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12160,730,164 - 60,751,054 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2160,730,051 - 60,749,678 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604243,353,983 - 43,369,330 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SRI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38788,205,115 - 88,226,976 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl788,205,115 - 88,226,993 (-)EnsemblGRCh38hg38GRCh38
GRCh37787,834,430 - 87,856,291 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36787,672,368 - 87,694,244 (-)NCBINCBI36Build 36hg18NCBI36
Celera782,539,034 - 82,560,910 (-)NCBICelera
Cytogenetic Map7q21.12NCBI
HuRef782,444,285 - 82,466,161 (-)NCBIHuRef
CHM1_1787,764,960 - 87,786,830 (-)NCBICHM1_1
T2T-CHM13v2.0789,455,604 - 89,477,464 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2787,165,789 - 87,187,665 (-)NCBI
Sri
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3958,096,078 - 8,119,314 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl58,096,078 - 8,119,379 (+)EnsemblGRCm39 Ensembl
GRCm3858,046,078 - 8,069,314 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl58,046,078 - 8,069,379 (+)EnsemblGRCm38mm10GRCm38
MGSCv3758,046,080 - 8,069,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3658,052,084 - 8,073,860 (+)NCBIMGSCv36mm8
Celera57,979,518 - 8,002,729 (+)NCBICelera
Cytogenetic Map5A1NCBI
cM Map53.38NCBI
Sri
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8426,928,338 - 26,952,980 (-)NCBIGRCr8
mRatBN7.2425,973,493 - 25,997,879 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl425,966,750 - 25,998,077 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx430,960,404 - 30,973,377 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0426,886,620 - 26,899,593 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0425,263,902 - 25,276,454 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0423,004,657 - 23,029,233 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl423,006,243 - 23,018,983 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0422,937,276 - 22,962,347 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera421,457,445 - 21,469,637 (-)NCBICelera
Cytogenetic Map4q12NCBI
Sri
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554325,541,311 - 5,560,294 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554325,541,311 - 5,559,781 (-)NCBIChiLan1.0ChiLan1.0
SRI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26106,086,942 - 106,101,957 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17154,351,580 - 154,366,595 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0780,199,719 - 80,214,733 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1793,849,129 - 93,864,088 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl793,850,496 - 93,864,029 (-)Ensemblpanpan1.1panPan2
SRI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11414,257,375 - 14,274,816 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1414,260,052 - 14,274,801 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1413,829,493 - 13,846,925 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01414,022,300 - 14,039,737 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1414,020,645 - 14,039,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11414,232,295 - 14,250,007 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01413,951,888 - 13,969,513 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01414,237,364 - 14,255,079 (-)NCBIUU_Cfam_GSD_1.0
Sri
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511827,273,150 - 27,285,562 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936763710,777 - 730,276 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936763715,884 - 728,548 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl968,490,890 - 68,515,322 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1968,492,235 - 68,515,247 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2974,928,185 - 74,950,459 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sri
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248095,160,737 - 5,191,514 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248095,160,731 - 5,187,914 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000010537   ⟹   ENSCSAP00000008630
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2160,730,051 - 60,749,678 (+)Ensembl
RefSeq Acc Id: XM_007982263   ⟹   XP_007980454
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12160,735,547 - 60,751,054 (+)NCBI
Vero_WHO_p1.0NW_02366604243,353,983 - 43,369,330 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007982264   ⟹   XP_007980455
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12160,735,547 - 60,749,869 (+)NCBI
Vero_WHO_p1.0NW_02366604243,353,983 - 43,369,330 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007980454 (Get FASTA)   NCBI Sequence Viewer  
  XP_007980455 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008630.1
RefSeq Acc Id: XP_007980454   ⟸   XM_007982263
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007980455   ⟸   XM_007982264
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000008630   ⟸   ENSCSAT00000010537


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012443 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010537.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.900 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene SRI ENTREZGENE
PANTHER CALPAIN, SMALL SUBUNIT 1 A-RELATED UniProtKB/TrEMBL
  SORCIN UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
  EF-hand_8 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A0D9RJ41_CHLSB UniProtKB/TrEMBL