BCOR (BCL6 corepressor) - Rat Genome Database

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Gene: BCOR (BCL6 corepressor) Chlorocebus sabaeus
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Symbol: BCOR
Name: BCL6 corepressor
RGD ID: 18381354
Description: ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); heat shock protein binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); chromatin remodeling (ortholog); heart development (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adenoid cystic carcinoma (ortholog); anterior segment dysgenesis 8 (ortholog); FOUND IN BCOR complex (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BCL-6 corepressor; BCL-6 corepressor-like; LOC103246985; LOC103247011
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X37,191,242 - 37,319,966 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX37,192,874 - 37,319,782 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660762,405,573 - 2,532,624 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BCOR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X37,191,242 - 37,319,966 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX37,192,874 - 37,319,782 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660762,405,573 - 2,532,624 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
BCOR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X40,051,246 - 40,177,329 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX40,049,815 - 40,177,329 (-)EnsemblGRCh38hg38GRCh38
GRCh37X39,910,499 - 40,036,582 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X39,795,561 - 39,846,998 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX44,049,354 - 44,175,356 (-)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX37,648,006 - 37,771,447 (-)NCBIHuRef
CHM1_1X39,942,309 - 40,068,287 (-)NCBICHM1_1
T2T-CHM13v2.0X39,452,491 - 39,578,567 (-)NCBIT2T-CHM13v2.0
Bcor
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X11,902,976 - 12,026,769 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX11,902,979 - 12,026,594 (-)EnsemblGRCm39 Ensembl
GRCm38X12,036,737 - 12,160,516 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX12,036,740 - 12,160,355 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X11,613,863 - 11,737,481 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X11,193,696 - 11,237,013 (-)NCBIMGSCv36mm8
CeleraX9,733,265 - 9,856,163 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX6.83NCBI
Bcor
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X13,282,431 - 13,402,254 (+)NCBIGRCr8
mRatBN7.2X10,609,756 - 10,729,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX10,687,732 - 10,729,613 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX10,875,038 - 10,916,895 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X14,371,910 - 14,413,764 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X10,634,826 - 10,676,706 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X11,570,155 - 11,692,022 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX11,648,989 - 11,691,099 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X12,366,781 - 12,488,777 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X22,699,778 - 22,820,234 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX11,211,546 - 11,253,981 (+)NCBICelera
Cytogenetic MapXq12NCBI
Bcor
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555661,412,540 - 1,457,329 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555661,412,540 - 1,510,339 (-)NCBIChiLan1.0ChiLan1.0
BCOR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X41,696,464 - 41,822,839 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X41,699,844 - 41,826,220 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X32,497,931 - 32,624,307 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X40,203,565 - 40,328,788 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX40,202,235 - 40,249,986 (-)Ensemblpanpan1.1panPan2
BCOR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X34,621,314 - 34,735,502 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX34,621,886 - 34,645,766 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX21,969,928 - 22,084,065 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X34,669,641 - 34,783,826 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX34,668,759 - 34,753,231 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X34,749,439 - 34,863,578 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X34,721,876 - 34,836,005 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X34,764,590 - 34,878,770 (-)NCBIUU_Cfam_GSD_1.0
Bcor
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X26,923,332 - 26,971,483 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365026,764,907 - 6,792,916 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365026,764,043 - 6,812,194 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCOR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX35,768,017 - 35,814,833 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X35,768,013 - 35,891,013 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X39,823,458 - 39,946,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Bcor
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476215,420,596 - 15,465,873 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476215,338,331 - 15,465,683 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 32 20
Low 4 20 40
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000012104   ⟹   ENSCSAP00000010148
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX37,192,874 - 37,239,111 (-)Ensembl
RefSeq Acc Id: ENSCSAT00000012106   ⟹   ENSCSAP00000010152
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX37,192,874 - 37,319,782 (-)Ensembl
RefSeq Acc Id: XM_007991407   ⟹   XP_007989598
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X37,191,242 - 37,319,869 (-)NCBI
Vero_WHO_p1.0NW_0236660762,405,573 - 2,532,624 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007991408   ⟹   XP_007989599
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X37,191,242 - 37,240,173 (-)NCBI
Vero_WHO_p1.0NW_0236660762,405,573 - 2,452,651 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007991410   ⟹   XP_007989601
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X37,191,242 - 37,286,737 (-)NCBI
Vero_WHO_p1.0NW_0236660762,405,573 - 2,500,722 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007991411   ⟹   XP_007989602
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X37,191,242 - 37,239,652 (-)NCBI
Vero_WHO_p1.0NW_0236660762,405,573 - 2,452,165 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007991413   ⟹   XP_007989604
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X37,193,113 - 37,239,158 (-)NCBI
Vero_WHO_p1.0NW_0236660762,405,573 - 2,452,141 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007991416   ⟹   XP_007989607
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X37,193,113 - 37,239,158 (-)NCBI
Vero_WHO_p1.0NW_0236660762,405,573 - 2,452,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007991417   ⟹   XP_007989608
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X37,193,113 - 37,319,966 (-)NCBI
Vero_WHO_p1.0NW_0236660762,405,573 - 2,532,570 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007991418   ⟹   XP_007989609
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X37,193,113 - 37,238,916 (-)NCBI
Vero_WHO_p1.0NW_0236660762,405,573 - 2,452,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007991419   ⟹   XP_007989610
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X37,193,113 - 37,319,966 (-)NCBI
Vero_WHO_p1.0NW_0236660762,405,573 - 2,532,624 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037992913   ⟹   XP_037848841
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660762,405,573 - 2,452,141 (-)NCBI
RefSeq Acc Id: XP_007989598   ⟸   XM_007991407
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989601   ⟸   XM_007991410
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989599   ⟸   XM_007991408
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989602   ⟸   XM_007991411
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989610   ⟸   XM_007991419
- Peptide Label: isoform X4
RefSeq Acc Id: XP_007989608   ⟸   XM_007991417
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RNG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007989607   ⟸   XM_007991416
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RNG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007989604   ⟸   XM_007991413
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989609   ⟸   XM_007991418
- Peptide Label: isoform X4
RefSeq Acc Id: ENSCSAP00000010148   ⟸   ENSCSAT00000012104
RefSeq Acc Id: ENSCSAP00000010152   ⟸   ENSCSAT00000012106
RefSeq Acc Id: XP_037848841   ⟸   XM_037992913
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014010 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012104.1 UniProtKB/TrEMBL
  ENSCSAT00000012106.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  3.10.260.40 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  BCOR UniProtKB/TrEMBL
  BCOR-like UniProtKB/TrEMBL
  PUFD UniProtKB/TrEMBL
  PUFD_som_sf UniProtKB/TrEMBL
NCBI Gene BCOR ENTREZGENE
PANTHER AGAP007537-PB UniProtKB/TrEMBL
  BCL-6 COREPRESSOR UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  BCOR UniProtKB/TrEMBL
  PUFD UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A0D9RNG3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 BCOR  BCL6 corepressor  LOC103246985  BCL-6 corepressor-like  Data merged from RGD:18530080 737654 PROVISIONAL
2020-12-03 BCOR  BCL6 corepressor  LOC103247011  BCL-6 corepressor-like  Data merged from RGD:18635268 737654 PROVISIONAL