FYTTD1 (forty-two-three domain containing 1) - Rat Genome Database

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Gene: FYTTD1 (forty-two-three domain containing 1) Chlorocebus sabaeus
Analyze
Symbol: FYTTD1
Name: forty-two-three domain containing 1
RGD ID: 18379544
Description: ENCODES a protein that exhibits mRNA binding (inferred); INVOLVED IN mRNA export from nucleus (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nuclear speck (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UAP56-interacting factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11591,468,378 - 91,498,836 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1591,469,033 - 91,500,059 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604165,412,718 - 65,445,227 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear speck  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FYTTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11591,468,378 - 91,498,836 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1591,469,033 - 91,500,059 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604165,412,718 - 65,445,227 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FYTTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383197,749,533 - 197,787,596 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3197,737,179 - 197,787,596 (+)EnsemblGRCh38hg38GRCh38
GRCh373197,476,404 - 197,514,467 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363198,961,080 - 198,995,584 (+)NCBINCBI36Build 36hg18NCBI36
Build 343198,964,992 - 198,999,494NCBI
Celera3196,093,531 - 196,127,401 (+)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3194,779,250 - 194,814,124 (+)NCBIHuRef
CHM1_13197,447,306 - 197,482,219 (+)NCBICHM1_1
T2T-CHM13v2.03200,481,909 - 200,519,978 (+)NCBIT2T-CHM13v2.0
Fyttd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391632,697,762 - 32,729,333 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1632,697,870 - 32,729,245 (+)EnsemblGRCm39 Ensembl
GRCm381632,877,581 - 32,908,963 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1632,877,500 - 32,908,875 (+)EnsemblGRCm38mm10GRCm38
MGSCv371632,877,870 - 32,909,049 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361632,797,587 - 32,828,622 (+)NCBIMGSCv36mm8
Celera1633,357,044 - 33,388,228 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1623.43NCBI
Fyttd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81181,383,040 - 81,412,604 (-)NCBIGRCr8
mRatBN7.21167,877,967 - 67,907,500 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1167,877,967 - 67,907,511 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1176,715,042 - 76,744,553 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01169,376,848 - 69,406,350 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01168,404,140 - 68,433,652 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01171,113,931 - 71,136,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1171,116,579 - 71,136,673 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01174,198,837 - 74,221,579 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41169,700,526 - 69,720,622 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11169,757,101 - 69,785,168 (-)NCBI
Celera1167,321,655 - 67,344,481 (-)NCBICelera
Cytogenetic Map11q22NCBI
Fyttd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542012,095,055 - 12,123,900 (-)NCBIChiLan1.0ChiLan1.0
FYTTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22195,663,480 - 195,699,239 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13195,671,286 - 195,707,045 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03195,166,837 - 195,201,886 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13205,049,920 - 205,084,249 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3205,049,785 - 205,084,249 (+)Ensemblpanpan1.1panPan2
FYTTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13328,920,361 - 28,947,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3328,920,361 - 28,945,707 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3328,941,718 - 28,968,373 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03329,149,253 - 29,179,308 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3329,147,874 - 29,177,871 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13328,948,213 - 28,974,642 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03328,994,323 - 29,020,942 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03329,614,369 - 29,641,032 (-)NCBIUU_Cfam_GSD_1.0
Fyttd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602125,501,502 - 125,541,081 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936784344,574 - 370,056 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936784344,564 - 370,088 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FYTTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13134,363,682 - 134,402,630 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113134,363,646 - 134,402,632 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213143,957,646 - 143,995,325 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Fyttd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473061,015,709 - 61,040,805 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 11 60
Low 9
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000006516   ⟹   ENSCSAP00000004722
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1591,469,033 - 91,500,059 (+)Ensembl
RefSeq Acc Id: XM_008009693   ⟹   XP_008007884
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11591,468,378 - 91,498,836 (+)NCBI
Vero_WHO_p1.0NW_02366604165,412,718 - 65,445,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008009695   ⟹   XP_008007886
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11591,468,983 - 91,498,836 (+)NCBI
Vero_WHO_p1.0NW_02366604165,412,741 - 65,445,227 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008007884 (Get FASTA)   NCBI Sequence Viewer  
  XP_008007886 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004722
  ENSCSAP00000004722.1
Reference Protein Sequences
RefSeq Acc Id: XP_008007884   ⟸   XM_008009693
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R7Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008007886   ⟸   XM_008009695
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000004722   ⟸   ENSCSAT00000006516


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008466 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006516.1 UniProtKB/TrEMBL
InterPro FYTTD1 UniProtKB/TrEMBL
KEGG Report csab:103242016 UniProtKB/TrEMBL
NCBI Gene FYTTD1 ENTREZGENE
PANTHER PTHR21038 UniProtKB/TrEMBL
  UAP56-INTERACTING FACTOR UniProtKB/TrEMBL
Pfam FYTT UniProtKB/TrEMBL
UniProt A0A0D9R7Y3 ENTREZGENE, UniProtKB/TrEMBL