WDR62 (WD repeat domain 62) - Rat Genome Database

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Gene: WDR62 (WD repeat domain 62) Chlorocebus sabaeus
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Symbol: WDR62
Name: WD repeat domain 62
RGD ID: 18377932
Description: INVOLVED IN mitotic spindle organization (ortholog); positive regulation of neuroblast proliferation (ortholog); positive regulation of neuron migration (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); complex cortical dysplasia with other brain malformations (ortholog); Developmental Disabilities (ortholog); FOUND IN centriolar satellite (inferred); centrosome (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 62
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,964,219 - 31,010,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,964,319 - 31,011,403 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660738,758,742 - 8,810,706 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WDR62
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,964,219 - 31,010,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,964,319 - 31,011,403 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660738,758,742 - 8,810,706 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
WDR62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381936,054,897 - 36,111,145 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1936,054,649 - 36,105,108 (+)EnsemblGRCh38hg38GRCh38
GRCh371936,545,799 - 36,596,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361941,237,623 - 41,287,852 (+)NCBINCBI36Build 36hg18NCBI36
Celera1933,259,959 - 33,310,190 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1933,051,308 - 33,101,495 (+)NCBIHuRef
CHM1_11936,547,139 - 36,597,353 (+)NCBICHM1_1
T2T-CHM13v2.01938,600,696 - 38,656,963 (+)NCBIT2T-CHM13v2.0
Wdr62
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39729,939,563 - 29,980,243 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl729,939,563 - 29,979,844 (-)EnsemblGRCm39 Ensembl
GRCm38730,240,138 - 30,281,908 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,240,138 - 30,280,419 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,025,157 - 31,065,440 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36729,948,898 - 29,989,181 (-)NCBIMGSCv36mm8
Celera724,846,534 - 24,911,761 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map717.34NCBI
Wdr62
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,618,992 - 94,658,097 (-)NCBIGRCr8
mRatBN7.2185,491,531 - 85,530,643 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,491,533 - 85,530,637 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx190,908,116 - 90,947,153 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,375,488 - 99,414,640 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,666,377 - 92,705,415 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0190,995,545 - 91,034,592 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl188,694,824 - 88,734,223 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,132,727 - 92,171,774 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,448,728 - 85,482,510 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,526,838 - 85,560,621 (+)NCBI
Celera179,865,970 - 79,905,079 (-)NCBICelera
Cytogenetic Map1q21NCBI
Wdr62
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,503,885 - 2,545,255 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,504,181 - 2,545,982 (-)NCBIChiLan1.0ChiLan1.0
WDR62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22042,056,064 - 42,106,920 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11944,039,672 - 44,090,489 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,973,725 - 33,030,297 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,721,289 - 41,777,038 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,721,281 - 41,777,038 (+)Ensemblpanpan1.1panPan2
WDR62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,594,243 - 116,641,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,594,244 - 116,641,191 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1115,999,825 - 116,047,171 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,197,202 - 117,244,720 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,197,203 - 117,245,435 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11116,764,609 - 116,811,924 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,384,790 - 116,432,353 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,439,956 - 117,487,492 (-)NCBIUU_Cfam_GSD_1.0
Wdr62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,309,957 - 11,349,593 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493692280,217 - 119,653 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493692280,136 - 119,702 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,419,015 - 45,474,050 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,418,966 - 45,477,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,820,975 - 40,876,258 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Wdr62
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479410,310,129 - 10,348,686 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479410,309,855 - 10,358,018 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000002293   ⟹   ENSCSAP00000000615
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl630,964,319 - 31,011,403 (+)Ensembl
RefSeq Acc Id: XM_037991582   ⟹   XP_037847510
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660738,758,742 - 8,810,706 (+)NCBI
RefSeq Acc Id: XM_037991583   ⟹   XP_037847511
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660738,758,742 - 8,810,706 (+)NCBI
RefSeq Acc Id: XM_037991584   ⟹   XP_037847512
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660738,758,742 - 8,810,706 (+)NCBI
RefSeq Acc Id: XR_005238298
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660738,758,742 - 8,810,706 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037847510 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847511 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847512 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000615.1
Ensembl Acc Id: ENSCSAP00000000615   ⟸   ENSCSAT00000002293
RefSeq Acc Id: XP_037847510   ⟸   XM_037991582
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QW76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037847511   ⟸   XM_037991583
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QW76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037847512   ⟸   XM_037991584
- Peptide Label: isoform X3
- UniProtKB: A0A0D9QW76 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004269 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002293.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Apc4_WD40_dom UniProtKB/TrEMBL
  CCD_WD-repeat_protein UniProtKB/TrEMBL
  Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene WDR62 ENTREZGENE
PANTHER WD REPEAT DOMAIN 62, ISOFORM G UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 62 UniProtKB/TrEMBL
Pfam ANAPC4_WD40 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  SSF50998 UniProtKB/TrEMBL
UniProt A0A0D9QW76 ENTREZGENE, UniProtKB/TrEMBL