PRICKLE3 (prickle planar cell polarity protein 3)

Gene: PRICKLE3 (prickle planar cell polarity protein 3) Chlorocebus sabaeus

Analyze

Symbol:

PRICKLE3

Name:

prickle planar cell polarity protein 3

RGD ID:

18372026

Description:

ENCODES a protein that exhibits metal ion binding (inferred); zinc ion binding (inferred); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

prickle-like protein 3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	46,271,001 - 46,286,440 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	46,266,985 - 46,283,689 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666076	11,835,728 - 11,847,007 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

congenital disorder of glycosylation type IIm (ISO)

genetic disease (ISO)

immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ISO)

Leber hereditary optic neuropathy (ISO)

Leber Optic Atrophy, Susceptibility To (ISO)

Leber plus disease (ISO)

neurodegeneration with brain iron accumulation 5 (ISO)

sensorineural hearing loss (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

X-linked epilepsy with variable learning disabilities and behavior disorders (ISO)

X-linked severe congenital neutropenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrion (IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

PRICKLE3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	46,271,001 - 46,286,440 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	46,266,985 - 46,283,689 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666076	11,835,728 - 11,847,007 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

PRICKLE3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	49,174,802 - 49,186,373 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	49,174,802 - 49,186,528 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	49,031,151 - 49,042,826 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	48,918,850 - 48,929,720 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	48,788,276 - 48,799,147	NCBI
Celera	X	52,621,593 - 52,632,463 (+)	NCBI		Celera
Cytogenetic Map	X	p11.23	NCBI
HuRef	X	46,689,176 - 46,699,847 (-)	NCBI		HuRef
CHM1_1	X	49,064,231 - 49,075,097 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	48,586,552 - 48,598,227 (-)	NCBI		T2T-CHM13v2.0

Prickle3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	7,523,616 - 7,535,086 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	7,523,499 - 7,534,425 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	7,657,379 - 7,668,197 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	7,657,260 - 7,668,186 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	7,235,659 - 7,245,312 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	6,815,492 - 6,825,145 (+)	NCBI		MGSCv36	mm8
MGSCv36	X	3,832,127 - 3,914,808 (+)	NCBI		MGSCv36	mm8
Celera	X	3,802,719 - 3,812,718 (-)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	3.45	NCBI

Prickle3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	17,509,551 - 17,520,157 (-)	NCBI		GRCr8
mRatBN7.2	X	14,837,647 - 14,849,305 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	14,837,650 - 14,848,218 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	19,651,793 - 19,662,569 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	20,420,565 - 20,431,339 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	16,685,708 - 16,696,482 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	15,682,652 - 15,693,473 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	15,682,653 - 15,693,473 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	16,473,878 - 16,484,448 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	26,878,508 - 26,889,077 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	26,931,977 - 26,942,546 (-)	NCBI
Celera	X	14,920,980 - 14,931,582 (-)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

Prickle3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955543	662,438 - 673,662 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955543	662,438 - 673,386 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRICKLE3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	50,666,421 - 50,678,526 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	50,670,220 - 50,681,916 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	41,474,569 - 41,486,986 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	49,327,145 - 49,338,613 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	49,327,145 - 49,338,613 (-)	Ensembl	panpan1.1		panPan2

PRICKLE3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	42,276,316 - 42,285,428 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	42,275,900 - 42,285,321 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	16,655,446 - 16,664,565 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	42,418,291 - 42,427,520 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	42,418,294 - 42,427,517 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	42,402,367 - 42,411,486 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	42,390,018 - 42,399,136 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	42,484,780 - 42,493,899 (-)	NCBI		UU_Cfam_GSD_1.0

Prickle3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	34,810,353 - 34,820,245 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936721	1,050,801 - 1,060,574 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936721	1,050,755 - 1,060,603 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRICKLE3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	43,218,277 - 43,230,367 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	43,218,271 - 43,230,368 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	48,066,244 - 48,078,307 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Prickle3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624893	913,755 - 927,122 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624893	916,340 - 927,128 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	1
Low	35	18	35
Below cutoff		2	25

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007991677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007991678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007991679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000010986 ⟹ ENSCSAP00000009067

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	X	46,266,985 - 46,283,689 (-)	Ensembl

RefSeq Acc Id:

XM_007991678 ⟹ XP_007989869

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	X	46,271,005 - 46,285,465 (-)	NCBI
Vero_WHO_p1.0	NW_023666076	11,835,728 - 11,846,170 (-)	NCBI

Sequence:

show sequence

TCCGCCCACCTCGGCCTCCCAAAGTGCCGGGATTATAGGCGTGAGCCACCGCGCCCGGCAGACC
TCCTCAGCTTCTAAAGGACACAGTACCTTGGAGGAATGTGGACGGACGGATGGAGTCCTACACT
CCTGGGATGCCGAAATGCTGACGGTCAAGAGACTGGGATTTGGGGGAACAAGGCTTCCAGGGTT
CCGCCTGAGCAAGGGAGTTTTTGACTTCTTAGACAGGACGGTCTTTCACTTCCTTTGGAGTGGG
TCTCTGACCTGGGAATGTGGGGTCTGGGTTTGGTGGTCCAGAGAAGGAATAAATAGCCCTAGGA
TAGGCGGGGTAAAGGCCAAGGTTTCTTGGGATGGGGGTTTATTGGGATAGGGGTTTCTCAGTAG
GCACCTCCTGAGATCCTGGGGAAGGGTCCCCAGTTCCTTGGGTATCAGGGCATGAGGCCAGGGT
TTGGGGGAGGAGCTCCTGAGCTTGTGAAGAGAGGGGCAGGGGTTCACGTGGGAATCTCAAGGAA
GGATGGGGTCTCGTCTCCTACCCTGTGGAACTGGAGTGCTGCTGGCGGCGTAGATGGAGAGGGA
ACCAGGATGAAGCCTGGGAGAGGATGCCCAGAATAGGGGCTCTGTGCCCTAGTGGGGAGAGTAC
TCTGAATTCTCGGGGAGATGCTTGAGCCCTGGAAGGATCTAAGGCTGGTGGGAGGTGTCTGAGG
CTAGGGGCGGACGGGAAGGGGGGGTTCGAGGCCAGCCTAGGGAGGGGAATTCCCTGAAAAGGGG
ACATATAAGGAGGTGGCTTCAACTGCCCCCCCTCTGCCTCGGTTGTGTCCCGTTCCCCCGCACT
CTGGGCGCTGTCCCAGCCTGCCCAGCGCTGCCCAGCCTCCAGAAGCAGAGGACCCAGACCGGGG
CCAGCCCTGCAACTCCTGCAGGGAGCAGTGCCCCGGCTTCCTGCTCCACGGCTGGAGAAAGATC
TGCCAGCATTGCAAATGCCCGCGGGAGGAGCACGCAGTGCACGCGGTGCCTGTGGACCTGGAAC
GCATCATGTGCCGGCTAATCTCGGACTTCCAGCGCCACTCCATCTCCGACGACGACTCAGGCTG
TGCATCGGAGGAGTATGCCTGGGTGCCCCCAGGCCTTAAGCCGGAGCAGGTATATCAGTTTTTC
AGCTGCCTCCCAGAGGATAAGGTCCCCTACGTCAACAGTCCTGGGGAGAAATACAGGATCAAGC
AGCTGCTGCACCAGCTGCCCCCACACGACAGTGAGGCACAGTACTGCACAGCACTGGAAGAGGA
GGAAAAGAAAGAGCTCCGAGCCTTTAGCCAGCAGCGGAAGCGGGAGAATCTGGGTCGTGGCATC
GTGCGCATCTTCCCAGTGACCATCACTGGGGCCATCTGTGAGGAGTGTGGGAAGCAGATTGGAG
GTGGAGATATTGCAGTGTTTGCCAGCCGTGCAGGCCTGGGTGCCTGCTGGCACCCACAGTGCTT
CGTGTGCACCACATGCCGGGAACTGCTGGTTGACCTCATCTACTTCTACCATGCTGGCAAGGTC
TACTGCGGGCGTCACCATGCCGAATGCCTGCGTCCACGCTGCCAAGCCTGTGACGAGATCATCT
TCTCCCCTGAGTGCACGGAGGCTGAGGGCCGCCACTGGCACATGGATCACTTCTGCTGCTTTGA
GTGTGAAGCTTCGCTAGGAGGGCAGCGCTACGTCATGCGTCAGAGCCGCCCCCACTGCTGTGCC
TGCTATGAGGCCCGCCATGCGGAGTACTGTGATGGCTGTGGGGAGCACATCGGCCTGGACCAAG
GCCAGATGGCTTACGAGGGCCAGCACTGGCATGCCTCAGACCGCTGCTTCTGCTGTAGTCGCTG
TGGGCGGGCCCTGCTGGGCCGTCCATTCCTGCCACGCCGAGGCCTAATCTTCTGCTCTCGAGCC
TGCAGCCTTGTGTCCGAGCCCACGGCTCCAGGACCCGGCCGCCGCAGCTGGAGTGCCGGCACTG
TTACAGCCCCACTTGCAGCCTCCACAGCCTCTTTCTCTGCTGCAGAGGGGGCATCAGAGACCAC
CACCAAAGGCACCTGCACGGAGTCAGCGCCAGCTACAGGCCCCGAGGAGCCTTCCCGCTTTCTG
AGAGGGGCTCCCCACCGCCACTCCATGCCGGAGCTGGGGCTCCGCAGTGCCCCCGAGCCGCCCC
CAGAGTCCCCCGGCCAGCCTAACCTGCGCCCAGATGATAGTGCCTTCGGTCGCCAGAGCACCCC
ACGCGTCAGCTTCCGCGACCCTCTCGTGTCTGAAGGAGGTCCGCGCCGGACCCTGAGTGCACCC
CCGGCCCAGCGCCGCAGGCCACGCAGTCCCCCACCCAGGGCCCCCAGCCGTCACCACCACCGTC
ATCATCACCATCACCACCACCACCGCCACCCAAGCAGACGTCTCCACTATCAGTGTGACGCGGG
ATCAGGGTCAGACTCGGGATCTTGCTCCAGCTCGCCCTCCAGCTCCAGTTCCGAATCCTCAGAG
GATGATGGCTTCTTCCTAGGAGAGCGCATCCCTCTGCCCCCGCATTTGTGCAGGCCCATGCCTG
CTCAGGACAATGCAACGGAGACCTTCAACTCCCCATCTTTATCACTCCCCAGGGACTCTCGCCC
AGGGATGCCTCGACAGACCCGACAGACCCGAGACAAGAACTGCATCGTGGCTTGAAGGCAGGCC
TTCCTGGAGGGGGCTCCATTCTCCAGTCAGAGTAGACGATGAGGCCCATGCCCCTCACCCCCAC
GCCCCACCCCCACAACCCAAGTCATAAATCCTCTTCCTCCCTC

hide sequence

RefSeq Acc Id:

XM_007991679 ⟹ XP_007989870

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	X	46,271,001 - 46,286,440 (-)	NCBI
Vero_WHO_p1.0	NW_023666076	11,835,728 - 11,846,977 (-)	NCBI

Sequence:

show sequence

AGTCTCCCCATCCTCCACTACAGAGCCCTCAAGCCCCAGGTCCCGTGAGAGGCTACGTGGCATA
CCGGGGTTCTGGGGGTCGTGCCTTGTGACGCCCCGCACTGGCCTGGAGCGGGAGGGCAGGGGCC
TTTCGCGCGGGGCACCCGGGGCTGCGTGCAGCTCACCTTTAGGCAGGGGGCGCCGTGGCAGCGG
AGAGACCACATGCCCAAGGGCGGGCCCTGCGGGGCGCGCTCCTCCCACGAGGGTGTCAGGTTTA
CGGAACCGAGCTCCCAGGCCGGACGCGCGGTGGCCTGACGGTCCCAAGGATTACATTCGCTTGA
CCCGGCCTGGCTTGACCCTGCCCGGGCGCGCCATGTTCGCGCGTGGGTCCCGGAGGCGCCGCTC
CGGGCGTGCGCCTCCAGAAGCAGAGGACCCAGACCGGGGCCAGCCCTGCAACTCCTGCAGGGAG
CAGTGCCCCGGCTTCCTGCTCCACGGCTGGAGAAAGATCTGCCAGCATTGCAAATGCCCGCGGG
AGGAGCACGCAGTGCACGCGGTGCCTGTGGACCTGGAACGCATCATGTGCCGGCTAATCTCGGA
CTTCCAGCGCCACTCCATCTCCGACGACGACTCAGGCTGTGCATCGGAGGAGTATGCCTGGGTG
CCCCCAGGCCTTAAGCCGGAGCAGGTATATCAGTTTTTCAGCTGCCTCCCAGAGGATAAGGTCC
CCTACGTCAACAGTCCTGGGGAGAAATACAGGATCAAGCAGCTGCTGCACCAGCTGCCCCCACA
CGACAGTGAGGCACAGTACTGCACAGCACTGGAAGAGGAGGAAAAGAAAGAGCTCCGAGCCTTT
AGCCAGCAGCGGAAGCGGGAGAATCTGGGTCGTGGCATCGTGCGCATCTTCCCAGTGACCATCA
CTGGGGCCATCTGTGAGGAGTGTGGGAAGCAGATTGGAGGTGGAGATATTGCAGTGTTTGCCAG
CCGTGCAGGCCTGGGTGCCTGCTGGCACCCACAGTGCTTCGTGTGCACCACATGCCGGGAACTG
CTGGTTGACCTCATCTACTTCTACCATGCTGGCAAGGTCTACTGCGGGCGTCACCATGCCGAAT
GCCTGCGTCCACGCTGCCAAGCCTGTGACGAGATCATCTTCTCCCCTGAGTGCACGGAGGCTGA
GGGCCGCCACTGGCACATGGATCACTTCTGCTGCTTTGAGTGTGAAGCTTCGCTAGGAGGGCAG
CGCTACGTCATGCGTCAGAGCCGCCCCCACTGCTGTGCCTGCTATGAGGCCCGCCATGCGGAGT
ACTGTGATGGCTGTGGGGAGCACATCGGCCTGGACCAAGGCCAGATGGCTTACGAGGGCCAGCA
CTGGCATGCCTCAGACCGCTGCTTCTGCTGTAGTCGCTGTGGGCGGGCCCTGCTGGGCCGTCCA
TTCCTGCCACGCCGAGGCCTAATCTTCTGCTCTCGAGCCTGCAGCCTTGTGTCCGAGCCCACGG
CTCCAGGACCCGGCCGCCGCAGCTGGAGTGCCGGCACTGTTACAGCCCCACTTGCAGCCTCCAC
AGCCTCTTTCTCTGCTGCAGAGGGGGCATCAGAGACCACCACCAAAGGCACCTGCACGGAGTCA
GCGCCAGCTACAGGCCCCGAGGAGCCTTCCCGCTTTCTGAGAGGGGCTCCCCACCGCCACTCCA
TGCCGGAGCTGGGGCTCCGCAGTGCCCCCGAGCCGCCCCCAGAGTCCCCCGGCCAGCCTAACCT
GCGCCCAGATGATAGTGCCTTCGGTCGCCAGAGCACCCCACGCGTCAGCTTCCGCGACCCTCTC
GTGTCTGAAGGAGGTCCGCGCCGGACCCTGAGTGCACCCCCGGCCCAGCGCCGCAGGCCACGCA
GTCCCCCACCCAGGGCCCCCAGCCGTCACCACCACCGTCATCATCACCATCACCACCACCACCG
CCACCCAAGCAGACGTCTCCACTATCAGTGTGACGCGGGATCAGGGTCAGACTCGGGATCTTGC
TCCAGCTCGCCCTCCAGCTCCAGTTCCGAATCCTCAGAGGATGATGGCTTCTTCCTAGGAGAGC
GCATCCCTCTGCCCCCGCATTTGTGCAGGCCCATGCCTGCTCAGGACAATGCAACGGAGACCTT
CAACTCCCCATCTTTATCACTCCCCAGGGACTCTCGCCCAGGGATGCCTCGACAGACCCGACAG
ACCCGAGACAAGAACTGCATCGTGGCTTGAAGGCAGGCCTTCCTGGAGGGGGCTCCATTCTCCA
GTCAGAGTAGACGATGAGGCCCATGCCCCTCACCCCCACGCCCCACCCCCACAACCCAAGTCAT
AAATCCTCTTCCTCCCTCCTTT

hide sequence

RefSeq Acc Id:

XM_037992919 ⟹ XP_037848847

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666076	11,835,968 - 11,847,007 (-)	NCBI

RefSeq Acc Id:

XM_037992920 ⟹ XP_037848848

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666076	11,835,968 - 11,846,170 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007989869	(Get FASTA)	NCBI Sequence Viewer
	XP_007989870	(Get FASTA)	NCBI Sequence Viewer
	XP_037848847	(Get FASTA)	NCBI Sequence Viewer
	XP_037848848	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000009067.1

RefSeq Acc Id:	XP_007989870 ⟸ XM_007991679
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RKC8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007989869 ⟸ XM_007991678
- Peptide Label:	isoform X4
- UniProtKB:	A0A0D9RKC8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000009067 ⟸ ENSCSAT00000010986

RefSeq Acc Id:	XP_037848847 ⟸ XM_037992919
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RKC8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037848848 ⟸ XM_037992920
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9RKC8 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000012891	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000010986.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	LIM1_prickle	UniProtKB/TrEMBL
	LIM2_prickle	UniProtKB/TrEMBL
	LIM3_prickle	UniProtKB/TrEMBL
	PET_domain	UniProtKB/TrEMBL
	PET_prickle	UniProtKB/TrEMBL
	Pk/Esn/Tes	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	PRICKLE3	ENTREZGENE
PANTHER	LIM DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PRICKLE PLANAR CELL POLARITY PROTEIN 3	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
	PET	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
	PET	UniProtKB/TrEMBL
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	A0A0D9RKC8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM