OFD1 (OFD1 centriole and centriolar satellite protein) - Rat Genome Database

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Gene: OFD1 (OFD1 centriole and centriolar satellite protein) Chlorocebus sabaeus
Analyze
Symbol: OFD1
Name: OFD1 centriole and centriolar satellite protein
RGD ID: 18371271
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); gamma-tubulin binding (ortholog); INVOLVED IN axoneme assembly (ortholog); centriole replication (ortholog); cilium assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); CAKUT (ortholog); COACH syndrome (ortholog); FOUND IN centriolar satellite (ortholog); ciliary basal body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X12,222,396 - 12,256,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX12,222,760 - 12,256,557 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605614,039,780 - 14,076,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
OFD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X12,222,396 - 12,256,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX12,222,760 - 12,256,557 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605614,039,780 - 14,076,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
OFD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X13,714,505 - 13,773,738 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX13,734,743 - 13,777,955 (+)EnsemblGRCh38hg38GRCh38
GRCh37X13,752,867 - 13,787,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X13,662,801 - 13,697,393 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X13,512,536 - 13,547,127NCBI
CeleraX17,869,913 - 17,904,562 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX11,510,937 - 11,544,940 (+)NCBIHuRef
CHM1_1X13,783,650 - 13,818,298 (+)NCBICHM1_1
T2T-CHM13v2.0X13,295,911 - 13,355,418 (+)NCBIT2T-CHM13v2.0
Ofd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X165,171,503 - 165,223,704 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX165,173,029 - 165,223,700 (-)EnsemblGRCm39 Ensembl
GRCm38X166,386,573 - 166,440,704 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX166,390,033 - 166,440,704 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X162,827,965 - 162,878,636 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X161,735,041 - 161,784,660 (-)NCBIMGSCv36mm8
CeleraX149,569,705 - 149,620,495 (-)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX77.28NCBI
Ofd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X31,647,000 - 31,687,768 (+)NCBIGRCr8
mRatBN7.2X28,015,347 - 28,056,115 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX28,015,347 - 28,056,110 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX29,049,925 - 29,090,559 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X32,485,025 - 32,525,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X28,664,565 - 28,705,199 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X29,562,165 - 29,602,934 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX29,562,165 - 29,602,925 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X29,955,456 - 29,996,224 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X48,701,675 - 48,742,443 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX28,388,104 - 28,428,825 (+)NCBICelera
Cytogenetic MapXq13NCBI
Ofd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555194,433,855 - 4,471,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555194,433,747 - 4,470,842 (-)NCBIChiLan1.0ChiLan1.0
OFD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X15,468,675 - 15,552,455 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X15,472,486 - 15,552,078 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X6,296,597 - 6,376,197 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X13,630,006 - 13,669,285 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX13,611,304 - 13,664,512 (+)Ensemblpanpan1.1panPan2
OFD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X10,140,439 - 10,194,478 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX10,140,067 - 10,194,472 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX10,114,679 - 10,168,786 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X10,098,262 - 10,152,653 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX10,092,106 - 10,152,605 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X10,166,885 - 10,220,990 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X10,158,225 - 10,212,581 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X10,184,578 - 10,238,702 (+)NCBIUU_Cfam_GSD_1.0
Ofd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X3,292,935 - 3,331,915 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364703,292,249 - 3,331,800 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364703,292,961 - 3,331,915 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OFD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X10,361,403 - 10,415,502 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X11,314,606 - 11,369,244 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ofd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624882376,556 - 416,509 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624882376,447 - 417,066 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 26 3 32
Low 10 17 28
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000013126   ⟹   ENSCSAP00000011137
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX12,222,760 - 12,256,557 (+)Ensembl
RefSeq Acc Id: XM_037986349   ⟹   XP_037842277
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605614,039,781 - 14,074,056 (+)NCBI
RefSeq Acc Id: XR_005236368
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605614,039,780 - 14,076,648 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037842277 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011137.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000011137   ⟸   ENSCSAT00000013126
RefSeq Acc Id: XP_037842277   ⟸   XM_037986349
- UniProtKB: A0A0D9RR98 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015093 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013126.1 UniProtKB/TrEMBL
InterPro LisH UniProtKB/TrEMBL
NCBI Gene OFD1 ENTREZGENE
PANTHER LISH DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ORAL-FACIAL-DIGITAL SYNDROME 1 PROTEIN HOMOLOG UniProtKB/TrEMBL
Pfam LisH_2 UniProtKB/TrEMBL
PROSITE LISH UniProtKB/TrEMBL
SMART LisH UniProtKB/TrEMBL
UniProt A0A0D9RR98 ENTREZGENE, UniProtKB/TrEMBL