CFAP47 (cilia and flagella associated protein 47) - Rat Genome Database

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Gene: CFAP47 (cilia and flagella associated protein 47) Chlorocebus sabaeus
Analyze
Symbol: CFAP47
Name: cilia and flagella associated protein 47
RGD ID: 18369345
Description: INVOLVED IN sperm axoneme assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); male infertility (ortholog); FOUND IN sperm connecting piece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cilia- and flagella-associated protein 47; LOC103231790; uncharacterized LOC103231790; uncharacterized protein LOC103231790
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X34,482,869 - 34,908,680 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605636,527,936 - 36,954,089 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CFAP47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X34,482,869 - 34,908,680 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605636,527,936 - 36,954,089 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CFAP47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X35,919,734 - 36,385,317 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX35,919,734 - 36,385,317 (+)EnsemblGRCh38hg38GRCh38
GRCh37X35,937,851 - 36,403,432 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X35,974,974 - 36,073,108 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X35,697,554 - 35,767,926NCBI
CeleraX40,192,665 - 40,290,788 (+)NCBICelera
Cytogenetic MapXp21.1NCBI
HuRefX33,805,995 - 33,904,507 (+)NCBIHuRef
CHM1_1X36,096,144 - 36,194,270 (+)NCBICHM1_1
T2T-CHM13v2.0X35,515,293 - 35,981,097 (+)NCBIT2T-CHM13v2.0
Cfap47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X78,310,164 - 78,560,957 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX78,310,165 - 78,560,891 (-)EnsemblGRCm39 Ensembl
GRCm38X79,266,558 - 79,517,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX79,266,559 - 79,517,285 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X76,727,907 - 76,762,624 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X75,616,950 - 75,770,004 (-)NCBIMGSCv36mm8
MGSCv36X62,455,939 - 62,544,877 (-)NCBIMGSCv36mm8
CeleraX70,795,560 - 70,830,047 (-)NCBICelera
Cytogenetic MapXBNCBI
cM MapX38.37NCBI
Cfap47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X47,149,085 - 47,504,169 (-)NCBIGRCr8
mRatBN7.2X43,264,687 - 43,616,607 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX43,263,490 - 43,616,852 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X46,791,976 - 46,903,351 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X46,916,173 - 46,981,651 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X46,767,259 - 46,895,191 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X65,022,340 - 65,127,809 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX43,910,588 - 44,260,814 (-)NCBICelera
Cytogenetic MapXq21NCBI
CFAP47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X37,765,469 - 38,232,791 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X37,768,844 - 38,236,165 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X28,567,102 - 29,031,601 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X36,200,790 - 36,662,304 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX36,200,790 - 36,662,304 (+)Ensemblpanpan1.1panPan2
CFAP47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X30,880,335 - 31,390,675 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX35,872,782 - 35,937,450 (+)NCBIDog10K_Boxer_Tasha
Dog10K_Boxer_TashaX18,347,860 - 18,742,151 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X30,927,159 - 31,435,647 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX30,927,222 - 31,435,966 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X30,979,606 - 31,489,356 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X30,997,822 - 31,481,627 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X31,080,147 - 31,584,762 (+)NCBIUU_Cfam_GSD_1.0
Cfap47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X23,381,834 - 23,790,025 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365023,254,001 - 3,630,408 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X31,879,143 - 32,331,543 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X35,322,447 - 35,697,835 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cfap47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476219,075,485 - 19,603,914 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_037986564   ⟹   XP_037842492
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605636,527,936 - 36,954,089 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037842492 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_037842492   ⟸   XM_037986564


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC103231790 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 CFAP47  cilia and flagella associated protein 47  LOC103231790  uncharacterized LOC103231790  Symbol and/or name change 5135510 APPROVED