MEGF11 (multiple EGF like domains 11) - Rat Genome Database

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Gene: MEGF11 (multiple EGF like domains 11) Chlorocebus sabaeus
Analyze
Symbol: MEGF11
Name: multiple EGF like domains 11
RGD ID: 18364186
Description: INVOLVED IN homotypic cell-cell adhesion (ortholog); retina layer formation (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: multiple epidermal growth factor-like domains protein 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12617,297,066 - 17,675,888 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048123,766,336 - 124,148,801 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MEGF11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12617,297,066 - 17,675,888 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048123,766,336 - 124,148,801 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MEGF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381565,895,299 - 66,253,750 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1565,895,079 - 66,253,756 (-)EnsemblGRCh38hg38GRCh38
GRCh371566,187,637 - 66,546,088 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361563,974,693 - 64,333,129 (-)NCBINCBI36Build 36hg18NCBI36
Celera1543,065,556 - 43,436,170 (-)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1543,012,367 - 43,382,504 (-)NCBIHuRef
CHM1_11566,305,506 - 66,664,221 (-)NCBICHM1_1
T2T-CHM13v2.01563,704,723 - 64,075,393 (-)NCBIT2T-CHM13v2.0
Megf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39964,291,556 - 64,618,584 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl964,292,908 - 64,616,487 (+)EnsemblGRCm39 Ensembl
GRCm38964,385,617 - 64,714,179 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl964,385,626 - 64,709,205 (+)EnsemblGRCm38mm10GRCm38
MGSCv37964,233,433 - 64,557,012 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36964,183,696 - 64,498,960 (+)NCBIMGSCv36mm8
Celera961,623,685 - 61,939,629 (+)NCBICelera
Cytogenetic Map9CNCBI
cM Map934.67NCBI
Megf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8873,787,568 - 74,113,228 (+)NCBIGRCr8
mRatBN7.2864,892,312 - 65,218,984 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl864,892,387 - 65,216,061 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0869,859,256 - 70,191,070 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl869,971,778 - 70,184,742 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0869,568,692 - 69,891,815 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4868,658,535 - 68,923,692 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera864,298,446 - 64,625,927 (+)NCBICelera
Cytogenetic Map8q24NCBI
Megf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554509,355,060 - 9,632,119 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554509,355,134 - 9,634,747 (+)NCBIChiLan1.0ChiLan1.0
MEGF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21655,144,035 - 55,519,796 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11559,314,696 - 59,690,443 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01544,836,750 - 45,208,674 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11563,113,926 - 63,358,656 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1563,116,564 - 63,204,508 (-)Ensemblpanpan1.1panPan2
MEGF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13030,224,538 - 30,561,565 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3030,227,160 - 30,561,562 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3030,151,924 - 30,496,100 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03030,414,657 - 30,758,453 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13030,344,360 - 30,688,485 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03030,407,550 - 30,751,734 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03030,648,503 - 30,993,300 (-)NCBIUU_Cfam_GSD_1.0
Megf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640108,268,548 - 108,589,136 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647126,114,429 - 26,437,449 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647126,119,146 - 26,437,057 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEGF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,894,312 - 164,275,442 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,894,929 - 164,275,439 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21181,630,679 - 181,700,021 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Megf11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247816,497,144 - 6,693,967 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247816,395,567 - 6,695,605 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008016192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008016193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008016194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008016195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008016196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008016197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008016198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008016199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008016200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008016201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008016202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008016203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038008853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005244063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005244064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005244065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005244066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005244067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005244068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_038008839   ⟹   XP_037864767
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,766,336 - 124,148,801 (-)NCBI
RefSeq Acc Id: XM_038008840   ⟹   XP_037864768
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,776,228 - 124,148,801 (-)NCBI
RefSeq Acc Id: XM_038008841   ⟹   XP_037864769
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,769,823 - 124,021,894 (-)NCBI
RefSeq Acc Id: XM_038008842   ⟹   XP_037864770
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,776,228 - 124,021,894 (-)NCBI
RefSeq Acc Id: XM_038008843   ⟹   XP_037864771
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,766,336 - 124,148,776 (-)NCBI
RefSeq Acc Id: XM_038008844   ⟹   XP_037864772
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,780,428 - 124,021,892 (-)NCBI
RefSeq Acc Id: XM_038008845   ⟹   XP_037864773
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,776,973 - 124,021,893 (-)NCBI
RefSeq Acc Id: XM_038008846   ⟹   XP_037864774
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,766,336 - 124,148,801 (-)NCBI
RefSeq Acc Id: XM_038008847   ⟹   XP_037864775
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,776,228 - 124,021,892 (-)NCBI
RefSeq Acc Id: XM_038008848   ⟹   XP_037864776
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,776,228 - 124,021,892 (-)NCBI
RefSeq Acc Id: XM_038008849   ⟹   XP_037864777
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,769,823 - 124,021,892 (-)NCBI
RefSeq Acc Id: XM_038008850   ⟹   XP_037864778
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,766,336 - 124,021,896 (-)NCBI
RefSeq Acc Id: XM_038008851   ⟹   XP_037864779
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,766,336 - 124,021,898 (-)NCBI
RefSeq Acc Id: XM_038008852   ⟹   XP_037864780
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,766,336 - 124,021,894 (-)NCBI
RefSeq Acc Id: XM_038008853   ⟹   XP_037864781
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,766,336 - 124,016,811 (-)NCBI
RefSeq Acc Id: XR_005244063
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,780,038 - 124,021,892 (-)NCBI
RefSeq Acc Id: XR_005244064
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,780,004 - 124,021,892 (-)NCBI
RefSeq Acc Id: XR_005244065
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,769,824 - 124,021,892 (-)NCBI
RefSeq Acc Id: XR_005244066
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,777,028 - 124,021,893 (-)NCBI
RefSeq Acc Id: XR_005244067
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,776,228 - 124,021,892 (-)NCBI
RefSeq Acc Id: XR_005244068
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048123,769,824 - 124,148,801 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_037864774   ⟸   XM_038008846
- Peptide Label: isoform X7
RefSeq Acc Id: XP_037864767   ⟸   XM_038008839
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037864771   ⟸   XM_038008843
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037864779   ⟸   XM_038008851
- Peptide Label: isoform X12
RefSeq Acc Id: XP_037864778   ⟸   XM_038008850
- Peptide Label: isoform X11
RefSeq Acc Id: XP_037864780   ⟸   XM_038008852
- Peptide Label: isoform X13
RefSeq Acc Id: XP_037864781   ⟸   XM_038008853
- Peptide Label: isoform X14
RefSeq Acc Id: XP_037864769   ⟸   XM_038008841
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037864777   ⟸   XM_038008849
- Peptide Label: isoform X10
RefSeq Acc Id: XP_037864768   ⟸   XM_038008840
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037864770   ⟸   XM_038008842
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037864776   ⟸   XM_038008848
- Peptide Label: isoform X9
RefSeq Acc Id: XP_037864775   ⟸   XM_038008847
- Peptide Label: isoform X8
RefSeq Acc Id: XP_037864773   ⟸   XM_038008845
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037864772   ⟸   XM_038008844
- Peptide Label: isoform X5


Additional Information

Database Acc Id Source(s)
NCBI Gene MEGF11 ENTREZGENE