CDC42SE1 (CDC42 small effector 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: CDC42SE1 (CDC42 small effector 1) Chlorocebus sabaeus
Analyze
Symbol: CDC42SE1
Name: CDC42 small effector 1
RGD ID: 18362198
Description: ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cell junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: CDC42 small effector protein 1
Orthologs:
Homo sapiens (human) : CDC42SE1 (CDC42 small effector 1)  HGNC  Alliance
Mus musculus (house mouse) : Cdc42se1 (CDC42 small effector 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : Cdc42se1 (CDC42 small effector 1)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cdc42se1 (CDC42 small effector 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CDC42SE1 (CDC42 small effector 1)
Canis lupus familiaris (dog) : CDC42SE1 (CDC42 small effector 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cdc42se1 (CDC42 small effector 1)
Sus scrofa (pig) : CDC42SE1 (CDC42 small effector 1)
Heterocephalus glaber (naked mole-rat) : Cdc42se1 (CDC42 small effector 1)
more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1641,319,304 - 41,319,540 (+)Ensembl


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
CDC42SE1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1641,319,304 - 41,319,540 (+)Ensembl
CDC42SE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1151,050,971 - 151,070,325 (-)EnsemblGRCh38hg38GRCh38
GRCh381151,050,980 - 151,059,626 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371151,023,447 - 151,032,125 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,290,071 - 149,298,749 (-)NCBINCBI36hg18NCBI36
Build 341147,836,532 - 147,845,123NCBI
Celera1124,138,756 - 124,147,427 (-)NCBI
Cytogenetic Map1q21.3NCBI
HuRef1122,400,859 - 122,409,533 (-)NCBIHuRef
CHM1_11152,418,769 - 152,427,442 (-)NCBICHM1_1
Cdc42se1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,135,735 - 95,143,735 (+)NCBI
GRCm38395,228,424 - 95,236,424 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,228,732 - 95,236,409 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,032,702 - 95,040,331 (+)NCBIGRCm37mm9NCBIm37
MGSCv36395,314,184 - 95,321,813 (+)NCBImm8
Celera396,659,877 - 96,667,458 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
Cdc42se1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02196,402,837 - 196,410,664 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,402,837 - 196,410,659 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02215,899,668 - 215,907,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,138,391 - 190,146,015 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2175,339,341 - 175,347,166 (+)NCBICelera
Cytogenetic Map2q34NCBI
Cdc42se1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588423,091 - 429,917 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955588423,091 - 440,248 (-)NCBIChiLan1.0ChiLan1.0
CDC42SE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11130,047,765 - 130,056,447 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,047,765 - 130,056,447 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01126,400,094 - 126,408,769 (-)NCBIMhudiblu_PPA_v0panPan3
CDC42SE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1760,140,632 - 60,155,099 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11760,138,497 - 60,146,344 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cdc42se1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365801,268,202 - 1,276,485 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC42SE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,164,024 - 98,180,576 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,171,937 - 98,180,577 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,424,892 - 107,433,555 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cdc42se1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477218,768,765 - 18,774,859 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 20 60
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008019365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AQIB01159117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000017992   ⟹   ENSCSAP00000017462
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1641,319,304 - 41,319,540 (+)Ensembl
Protein Sequences
Protein RefSeqs XP_008017556 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: ENSCSAP00000017462   ⟸   ENSCSAT00000017992


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000543 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCSAP00000017462 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017992 UniProtKB/TrEMBL
Gene3D-CATH 3.90.810.10 UniProtKB/TrEMBL
InterPro CRIB_dom UniProtKB/TrEMBL
  CRIB_dom_sf UniProtKB/TrEMBL
  SPEC UniProtKB/TrEMBL
KEGG Report csab:103247270 UniProtKB/TrEMBL
NCBI Gene CDC42SE1 ENTREZGENE
PANTHER PTHR13502 UniProtKB/TrEMBL
PROSITE CRIB UniProtKB/TrEMBL
UniProt A0A0D9S9C3 ENTREZGENE, UniProtKB/TrEMBL