ETFBKMT (electron transfer flavoprotein subunit beta lysine methyltransferase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ETFBKMT (electron transfer flavoprotein subunit beta lysine methyltransferase) Chlorocebus sabaeus
Analyze
Symbol: ETFBKMT
Name: electron transfer flavoprotein subunit beta lysine methyltransferase
RGD ID: 18360239
Description: ENCODES a protein that exhibits heat shock protein binding (inferred); methyltransferase activity (inferred); protein-lysine N-methyltransferase activity (inferred); INVOLVED IN peptidyl-lysine trimethylation (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: electron transfer flavoprotein beta subunit lysine methyltransferase; methyltransferase-like protein 20
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11131,122,358 - 31,147,473 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1131,134,559 - 31,147,174 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660693,827,222 - 3,844,457 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ETFBKMT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11131,122,358 - 31,147,473 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1131,134,559 - 31,147,174 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660693,827,222 - 3,844,457 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ETFBKMT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381231,647,160 - 31,673,114 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1231,647,160 - 31,673,114 (+)EnsemblGRCh38hg38GRCh38
GRCh371231,800,094 - 31,826,048 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361231,703,388 - 31,713,168 (+)NCBINCBI36Build 36hg18NCBI36
Celera1211,622,361 - 11,644,279 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1231,552,599 - 31,574,790 (+)NCBIHuRef
CHM1_11231,765,730 - 31,787,988 (+)NCBICHM1_1
T2T-CHM13v2.01231,523,671 - 31,549,944 (+)NCBIT2T-CHM13v2.0
Etfbkmt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396149,042,980 - 149,052,669 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6149,041,347 - 149,052,669 (+)EnsemblGRCm39 Ensembl
GRCm386149,141,476 - 149,151,171 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6149,139,849 - 149,151,171 (+)EnsemblGRCm38mm10GRCm38
MGSCv376149,090,119 - 149,099,693 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366149,098,767 - 149,108,341 (+)NCBIMGSCv36mm8
Celera6152,181,698 - 152,191,250 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.8NCBI
Etfbkmt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84183,871,819 - 183,936,843 (+)NCBIGRCr8
mRatBN7.24182,140,492 - 182,204,635 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,140,559 - 182,150,305 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4188,421,028 - 188,430,757 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04184,205,559 - 184,215,287 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04182,826,055 - 182,835,784 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04183,655,968 - 183,665,757 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,656,013 - 183,665,754 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04247,781,128 - 247,860,740 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44186,570,750 - 186,580,489 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14186,815,873 - 186,825,621 (+)NCBI
Celera4170,606,515 - 170,616,245 (+)NCBICelera
Cytogenetic Map4q44NCBI
Etfbkmt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541135,999,583 - 36,025,805 (+)NCBIChiLan1.0ChiLan1.0
ETFBKMT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21065,100,292 - 65,115,983 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11265,100,037 - 65,112,401 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01254,570,372 - 54,586,751 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11257,157,771 - 57,172,960 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1257,161,781 - 57,172,705 (-)Ensemblpanpan1.1panPan2
ETFBKMT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12717,103,168 - 17,110,405 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2717,103,210 - 17,165,828 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2729,307,366 - 29,316,228 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02717,282,441 - 17,291,321 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2717,284,117 - 17,289,687 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12717,094,544 - 17,101,717 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02717,125,321 - 17,134,185 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02729,460,638 - 29,467,804 (+)NCBIUU_Cfam_GSD_1.0
Etfbkmt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494577,700,471 - 77,707,880 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366074,532,230 - 4,541,283 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366074,533,607 - 4,541,230 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETFBKMT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1542,568,131 - 42,575,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Etfbkmt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624933958,332 - 970,785 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000005460   ⟹   ENSCSAP00000003679
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1131,134,559 - 31,147,174 (+)Ensembl
RefSeq Acc Id: XM_007968101   ⟹   XP_007966292
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11131,134,665 - 31,146,780 (+)NCBI
Vero_WHO_p1.0NW_0236660693,827,222 - 3,844,457 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007968102   ⟹   XP_007966293
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11131,134,835 - 31,146,780 (+)NCBI
Vero_WHO_p1.0NW_0236660693,827,222 - 3,844,266 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007968103   ⟹   XP_007966294
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11131,134,665 - 31,146,780 (+)NCBI
Vero_WHO_p1.0NW_0236660693,827,222 - 3,844,457 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037990154   ⟹   XP_037846082
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660693,827,222 - 3,844,267 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007966292 (Get FASTA)   NCBI Sequence Viewer  
  XP_007966293 (Get FASTA)   NCBI Sequence Viewer  
  XP_007966294 (Get FASTA)   NCBI Sequence Viewer  
  XP_037846082 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003679
  ENSCSAP00000003679.1
RefSeq Acc Id: XP_007966294   ⟸   XM_007968103
- UniProtKB: A0A0D9R4Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007966292   ⟸   XM_007968101
- UniProtKB: A0A0D9R4Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007966293   ⟸   XM_007968102
- UniProtKB: A0A0D9R4Z0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000003679   ⟸   ENSCSAT00000005460
RefSeq Acc Id: XP_037846082   ⟸   XM_037990154
- UniProtKB: A0A0D9R4Z0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007414 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005460.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
InterPro Ribosomal_L11_MeTrfase_PrmA UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/TrEMBL
KEGG Report csab:103218826 UniProtKB/TrEMBL
NCBI Gene ETFBKMT ENTREZGENE
PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE UniProtKB/TrEMBL
  ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE UniProtKB/TrEMBL
Pfam PrmA UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A0D9R4Z0 ENTREZGENE, UniProtKB/TrEMBL