CATSPER1 (cation channel sperm associated 1) - Rat Genome Database

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Gene: CATSPER1 (cation channel sperm associated 1) Chlorocebus sabaeus
Analyze
Symbol: CATSPER1
Name: cation channel sperm associated 1
RGD ID: 18359143
Description: ENCODES a protein that exhibits calcium-activated cation channel activity (inferred); voltage-gated calcium channel activity (inferred); INVOLVED IN calcium ion transport (ortholog); flagellated sperm motility (ortholog); fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN plasma membrane (ortholog); sperm flagellum (ortholog); sperm principal piece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cation channel sperm-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,231,436 - 8,241,189 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,231,915 - 8,241,048 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,517,162 - 105,526,620 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CATSPER1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,231,436 - 8,241,189 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,231,915 - 8,241,048 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,517,162 - 105,526,620 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CATSPER1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,016,752 - 66,026,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,016,752 - 66,026,479 (-)EnsemblGRCh38hg38GRCh38
GRCh371165,784,223 - 65,793,950 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,540,799 - 65,550,560 (-)NCBINCBI36Build 36hg18NCBI36
Build 341165,540,799 - 65,550,560NCBI
Celera1163,108,580 - 63,118,345 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1162,110,292 - 62,120,056 (-)NCBIHuRef
CHM1_11165,668,345 - 65,678,109 (-)NCBICHM1_1
T2T-CHM13v2.01166,010,876 - 66,020,602 (-)NCBIT2T-CHM13v2.0
Catsper1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,385,643 - 5,394,309 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,385,769 - 5,394,308 (+)EnsemblGRCm39 Ensembl
GRCm38195,335,615 - 5,344,281 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,335,741 - 5,344,280 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,335,741 - 5,344,153 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,335,741 - 5,344,153 (+)NCBIMGSCv36mm8
Celera195,207,633 - 5,216,045 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.3NCBI
Catsper1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,072,371 - 212,081,179 (+)NCBIGRCr8
mRatBN7.21202,643,009 - 202,652,059 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,643,038 - 202,651,824 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01220,715,000 - 220,724,235 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,714,995 - 220,719,939 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,644,645 - 227,653,234 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,979,161 - 207,987,686 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,178,195 - 200,187,563 (+)NCBICelera
Cytogenetic Map1q43NCBI
Catsper1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542219,315,640 - 19,322,868 (+)NCBIChiLan1.0ChiLan1.0
CATSPER1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,249,083 - 67,261,982 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,292,062 - 68,304,846 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,381,175 - 61,391,455 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,707,912 - 64,717,689 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,707,912 - 64,717,689 (-)Ensemblpanpan1.1panPan2
CATSPER1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,249,897 - 51,260,211 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,250,039 - 51,260,168 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,858,456 - 49,868,749 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,287,745 - 52,298,253 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,287,874 - 52,298,216 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,388,178 - 51,398,464 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,962,454 - 50,972,748 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,752,223 - 51,762,523 (+)NCBIUU_Cfam_GSD_1.0
Catsper1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,087,082 - 7,096,086 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365993,529,621 - 3,538,291 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CATSPER1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,312,906 - 6,321,690 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,312,906 - 6,321,690 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,384,927 - 5,393,273 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Catsper1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476720,410,216 - 20,420,303 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system nervous system
High
Medium
Low 13
Below cutoff 5 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000006149   ⟹   ENSCSAP00000004358
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl18,231,915 - 8,241,048 (+)Ensembl
RefSeq Acc Id: XM_007978865   ⟹   XP_007977056
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.118,231,436 - 8,241,189 (+)NCBI
Vero_WHO_p1.0NW_023666038105,517,162 - 105,526,620 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007977056 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004358.1
Reference Protein Sequences
RefSeq Acc Id: XP_007977056   ⟸   XM_007978865
- UniProtKB: A0A0D9R6W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000004358   ⟸   ENSCSAT00000006149


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008106 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006149.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
InterPro CatSper1 UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene CATSPER1 ENTREZGENE
PANTHER CATION CHANNEL SPERM-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR47193 UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A0D9R6W9 ENTREZGENE, UniProtKB/TrEMBL