CDH7 (cadherin 7) - Rat Genome Database

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Gene: CDH7 (cadherin 7) Chlorocebus sabaeus
Analyze
Symbol: CDH7
Name: cadherin 7
RGD ID: 18358503
Description: ENCODES a protein that exhibits cadherin binding (inferred); calcium ion binding (inferred); metal ion binding (inferred); INVOLVED IN adherens junction organization (inferred); calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (inferred); cell adhesion (inferred); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN adherens junction (inferred); catenin complex (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cadherin-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11813,867,659 - 14,009,754 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1813,870,360 - 13,989,936 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606011,781,146 - 11,883,643 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CDH7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11813,867,659 - 14,009,754 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1813,870,360 - 13,989,936 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606011,781,146 - 11,883,643 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CDH7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381865,750,252 - 65,890,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1865,750,252 - 65,890,337 (+)EnsemblGRCh38hg38GRCh38
GRCh371863,417,488 - 63,557,573 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361861,568,468 - 61,699,155 (+)NCBINCBI36Build 36hg18NCBI36
Build 341861,568,467 - 61,699,155NCBI
Celera1860,138,894 - 60,269,263 (+)NCBICelera
Cytogenetic Map18q22.1NCBI
HuRef1860,120,344 - 60,250,758 (+)NCBIHuRef
CHM1_11863,413,070 - 63,543,109 (+)NCBICHM1_1
T2T-CHM13v2.01865,956,460 - 66,096,655 (+)NCBIT2T-CHM13v2.0
Cdh7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391109,909,967 - 110,073,002 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1109,910,161 - 110,067,887 (+)EnsemblGRCm39 Ensembl
GRCm381109,982,237 - 110,145,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1109,982,431 - 110,140,157 (+)EnsemblGRCm38mm10GRCm38
MGSCv371111,880,314 - 112,035,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361111,811,284 - 111,966,548 (+)NCBIMGSCv36mm8
Celera1112,730,070 - 112,891,174 (+)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map150.73NCBI
Cdh7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81327,186,223 - 27,336,076 (+)NCBIGRCr8
mRatBN7.21326,672,058 - 26,821,571 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1326,672,484 - 26,819,846 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1327,026,414 - 27,166,627 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01328,310,876 - 28,451,099 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01326,983,235 - 27,119,003 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01331,081,064 - 31,228,884 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1331,081,804 - 31,231,213 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01336,218,960 - 36,368,374 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41316,884,417 - 17,020,846 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11316,871,885 - 17,009,083 (+)NCBI
Celera1326,435,771 - 26,572,149 (+)NCBICelera
Cytogenetic Map13q11NCBI
Cdh7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540249,444,814 - 49,562,803 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540249,444,814 - 49,568,653 (+)NCBIChiLan1.0ChiLan1.0
CDH7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21783,258,753 - 83,401,432 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11868,951,362 - 69,094,046 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01859,104,931 - 59,244,999 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11862,413,667 - 62,546,295 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1862,413,715 - 62,543,844 (+)Ensemblpanpan1.1panPan2
CDH7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1111,699,505 - 11,824,489 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl111,706,673 - 11,824,578 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha112,724,197 - 12,849,596 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0111,551,512 - 11,676,795 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl111,558,649 - 11,677,951 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1111,581,912 - 11,707,059 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0111,525,142 - 11,649,944 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0111,768,853 - 11,894,341 (-)NCBIUU_Cfam_GSD_1.0
Cdh7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494424,927,755 - 25,054,446 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936497168,265 - 293,236 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1156,295,434 - 156,435,822 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11156,295,885 - 156,436,375 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21173,581,771 - 173,665,159 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cdh7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479211,849,046 - 11,958,461 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479211,836,034 - 11,963,545 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 17
Low 10 11 33
Below cutoff 24 8 10

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000016308   ⟹   ENSCSAP00000014228
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1813,870,360 - 13,989,936 (-)Ensembl
RefSeq Acc Id: XM_037988043   ⟹   XP_037843971
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606011,781,146 - 11,883,643 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037843971 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014228.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000014228   ⟸   ENSCSAT00000016308
RefSeq Acc Id: XP_037843971   ⟸   XM_037988043


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018212 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016308.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Catenin_binding_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103244138 UniProtKB/TrEMBL
NCBI Gene CDH7 ENTREZGENE
PANTHER CADHERIN-7 UniProtKB/TrEMBL
  PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A0D9S039_CHLSB UniProtKB/TrEMBL