CSRP2 (cysteine and glycine rich protein 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: CSRP2 (cysteine and glycine rich protein 2) Chlorocebus sabaeus
Analyze
Symbol: CSRP2
Name: cysteine and glycine rich protein 2
RGD ID: 18358490
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN myoblast differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cysteine and glycine-rich protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11172,435,817 - 72,455,954 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1172,434,598 - 72,455,929 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037173,087,804 - 173,108,000 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CSRP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11172,435,817 - 72,455,954 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1172,434,598 - 72,455,929 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037173,087,804 - 173,108,000 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CSRP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381276,858,709 - 76,879,019 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1276,858,709 - 76,879,023 (-)EnsemblGRCh38hg38GRCh38
GRCh371277,252,489 - 77,272,799 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361275,776,627 - 75,796,930 (-)NCBINCBI36Build 36hg18NCBI36
Build 341275,754,963 - 75,775,267NCBI
Celera1276,918,012 - 76,938,313 (-)NCBICelera
Cytogenetic Map12q21.2NCBI
HuRef1274,305,412 - 74,325,698 (-)NCBIHuRef
CHM1_11277,218,021 - 77,238,339 (-)NCBICHM1_1
T2T-CHM13v2.01276,836,580 - 76,856,889 (-)NCBIT2T-CHM13v2.0
Csrp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910110,756,037 - 110,775,375 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10110,755,650 - 110,775,483 (+)EnsemblGRCm39 Ensembl
GRCm3810110,920,176 - 110,939,514 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10110,919,789 - 110,939,622 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710110,357,232 - 110,376,570 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610110,324,289 - 110,343,732 (+)NCBIMGSCv36mm8
Celera10112,849,513 - 112,868,818 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1057.84NCBI
Csrp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8748,235,415 - 48,254,049 (+)NCBIGRCr8
mRatBN7.2746,349,109 - 46,367,743 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl746,348,686 - 46,367,745 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx748,248,835 - 48,267,393 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0750,451,964 - 50,470,522 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0750,229,694 - 50,248,252 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0753,630,675 - 53,649,309 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl753,630,621 - 53,649,310 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0753,641,861 - 53,660,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4749,910,235 - 49,929,536 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1749,930,505 - 49,949,807 (+)NCBI
Celera743,154,739 - 43,173,322 (+)NCBICelera
Cytogenetic Map7q22NCBI
Csrp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540516,001,568 - 16,020,787 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540516,001,568 - 16,020,642 (-)NCBIChiLan1.0ChiLan1.0
CSRP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21084,896,312 - 84,917,192 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11284,892,703 - 84,913,035 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01274,376,871 - 74,397,168 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11277,227,481 - 77,247,732 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1277,227,481 - 77,247,557 (-)Ensemblpanpan1.1panPan2
CSRP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11519,744,074 - 19,747,109 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1520,216,652 - 20,230,291 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01520,071,536 - 20,085,201 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11519,671,196 - 19,684,832 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01519,729,070 - 19,742,682 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01519,857,892 - 19,871,540 (-)NCBIUU_Cfam_GSD_1.0
Csrp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494540,652,573 - 40,672,320 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365685,055,885 - 5,075,998 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365685,056,006 - 5,075,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSRP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5104,273,168 - 104,295,141 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15104,271,717 - 104,295,142 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25109,449,680 - 109,475,944 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Csrp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475021,201,462 - 21,220,268 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475021,202,106 - 21,220,268 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 29 34
Low 7 16 26
Below cutoff 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000002039   ⟹   ENSCSAP00000000368
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1172,434,598 - 72,455,929 (-)Ensembl
RefSeq Acc Id: XM_008004088   ⟹   XP_008002279
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11172,435,817 - 72,455,950 (-)NCBI
Vero_WHO_p1.0NW_023666037173,087,807 - 173,108,000 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008004089   ⟹   XP_008002280
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11172,435,817 - 72,455,954 (-)NCBI
Vero_WHO_p1.0NW_023666037173,087,804 - 173,108,000 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008002279 (Get FASTA)   NCBI Sequence Viewer  
  XP_008002280 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000368
  ENSCSAP00000000368.1
Reference Protein Sequences
RefSeq Acc Id: XP_008002280   ⟸   XM_008004089
- UniProtKB: A0A0D9QVH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008002279   ⟸   XM_008004088
- UniProtKB: A0A0D9QVH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000000368   ⟸   ENSCSAT00000002039


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004009 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002039.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro Znf_LIM UniProtKB/TrEMBL
KEGG Report csab:103238765 UniProtKB/TrEMBL
NCBI Gene CSRP2 ENTREZGENE
PANTHER CYSTEINE AND GLYCINE-RICH PROTEIN 2 UniProtKB/TrEMBL
  RHO-GTPASE-ACTIVATING PROTEIN LRG1 UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A0D9QVH9 ENTREZGENE, UniProtKB/TrEMBL