NABP1 (nucleic acid binding protein 1) - Rat Genome Database

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Gene: NABP1 (nucleic acid binding protein 1) Chlorocebus sabaeus
Analyze
Symbol: NABP1
Name: nucleic acid binding protein 1
RGD ID: 18355514
Description: ENCODES a protein that exhibits DNA binding (inferred); RNA binding (inferred); single-stranded DNA binding (inferred); INVOLVED IN DNA damage response (inferred); DNA repair (inferred); double-strand break repair via homologous recombination (inferred); ASSOCIATED WITH genetic disease (ortholog); multiple sclerosis (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN SOSS complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SOSS complex subunit B2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11077,210,624 - 77,222,340 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1077,210,702 - 77,218,289 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040122,262,012 - 122,273,817 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NABP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11077,210,624 - 77,222,340 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1077,210,702 - 77,218,289 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040122,262,012 - 122,273,817 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NABP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382191,678,136 - 191,686,943 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2191,678,068 - 191,741,097 (+)EnsemblGRCh38hg38GRCh38
GRCh372192,542,862 - 192,551,669 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362192,251,503 - 192,259,906 (+)NCBINCBI36Build 36hg18NCBI36
Celera2186,137,910 - 186,148,360 (+)NCBICelera
Cytogenetic Map2q32.3NCBI
HuRef2184,402,149 - 184,412,599 (+)NCBIHuRef
CHM1_12192,548,739 - 192,559,189 (+)NCBICHM1_1
T2T-CHM13v2.02192,167,017 - 192,175,824 (+)NCBIT2T-CHM13v2.0
Nabp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39151,504,127 - 51,517,634 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl151,505,021 - 51,517,584 (-)EnsemblGRCm39 Ensembl
GRCm38151,464,968 - 51,478,475 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl151,465,862 - 51,478,425 (-)EnsemblGRCm38mm10GRCm38
MGSCv37151,526,332 - 51,535,243 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36151,413,235 - 51,422,944 (-)NCBIMGSCv36mm8
Celera151,767,306 - 51,776,203 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.58NCBI
Nabp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8957,570,326 - 57,625,926 (+)NCBIGRCr8
mRatBN7.2950,098,552 - 50,133,982 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl950,126,726 - 50,134,107 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx958,676,153 - 58,683,138 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0963,798,993 - 63,805,978 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0962,094,976 - 62,101,961 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0955,049,893 - 55,057,784 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl955,050,203 - 55,057,658 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0954,749,751 - 54,757,646 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4947,194,891 - 47,201,876 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1947,196,304 - 47,203,289 (+)NCBI
Celera947,773,210 - 47,780,195 (+)NCBICelera
Cytogenetic Map9q22NCBI
Nabp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554037,604,144 - 7,611,042 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554037,603,002 - 7,610,925 (-)NCBIChiLan1.0ChiLan1.0
NABP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21394,357,402 - 94,370,067 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B94,372,354 - 94,383,615 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B78,980,156 - 78,989,309 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B196,895,143 - 196,905,547 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B196,895,166 - 196,903,977 (+)Ensemblpanpan1.1panPan2
NABP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,157,357 - 2,163,812 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl372,157,356 - 2,161,091 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha373,101,888 - 3,111,539 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0372,042,381 - 2,056,370 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl372,041,496 - 2,051,976 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1372,051,987 - 2,065,978 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0372,019,594 - 2,033,559 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0372,032,137 - 2,046,116 (+)NCBIUU_Cfam_GSD_1.0
Nabp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303150,221,977 - 150,229,789 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365066,608,333 - 6,616,076 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NABP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1596,313,903 - 96,335,191 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11596,313,884 - 96,322,108 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215107,658,457 - 107,666,681 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Nabp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248544,512,692 - 4,520,684 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 19
Low 36 1 60
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000010130   ⟹   ENSCSAP00000008228
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1077,210,702 - 77,218,289 (+)Ensembl
RefSeq Acc Id: XM_007965691   ⟹   XP_007963882
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11077,210,689 - 77,221,026 (+)NCBI
Vero_WHO_p1.0NW_023666040122,262,012 - 122,273,779 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007965692   ⟹   XP_007963883
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11077,210,624 - 77,222,340 (+)NCBI
Vero_WHO_p1.0NW_023666040122,262,012 - 122,273,817 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005241492
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666040122,262,012 - 122,273,779 (-)NCBI
RefSeq Acc Id: XR_005241493
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666040122,262,012 - 122,273,764 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007963882 (Get FASTA)   NCBI Sequence Viewer  
  XP_007963883 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008228
  ENSCSAP00000008228.1
Reference Protein Sequences
RefSeq Acc Id: XP_007963883   ⟸   XM_007965692
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007963882   ⟸   XM_007965691
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RHY9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000008228   ⟸   ENSCSAT00000010130


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012038 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010130.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/TrEMBL
  Ssb-like_OB UniProtKB/TrEMBL
KEGG Report csab:103217540 UniProtKB/TrEMBL
NCBI Gene NABP1 ENTREZGENE
PANTHER OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED UniProtKB/TrEMBL
  SOSS COMPLEX SUBUNIT B2 UniProtKB/TrEMBL
Pfam Ssb-like_OB UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
UniProt A0A0D9RHY9 ENTREZGENE, UniProtKB/TrEMBL