ALDH4A1 (aldehyde dehydrogenase 4 family member A1) - Rat Genome Database

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Gene: ALDH4A1 (aldehyde dehydrogenase 4 family member A1) Chlorocebus sabaeus
Analyze
Symbol: ALDH4A1
Name: aldehyde dehydrogenase 4 family member A1
RGD ID: 18355306
Description: ENCODES a protein that exhibits 1-pyrroline-5-carboxylate dehydrogenase activity (inferred); aldehyde dehydrogenase (NAD+) activity (inferred); identical protein binding (inferred); INVOLVED IN proline catabolic process to glutamate (inferred); proline metabolic process (inferred); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; AGAT deficiency pathway; arginine and proline metabolic pathway; ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); autism spectrum disorder (ortholog); chromosome 1p36 deletion syndrome (ortholog); FOUND IN cytosol (inferred); mitochondrial matrix (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120113,661,850 - 113,693,665 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660332,463,684 - 2,495,495 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ALDH4A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120113,661,850 - 113,693,665 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660332,463,684 - 2,495,495 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ALDH4A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38118,871,430 - 18,902,555 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl118,871,430 - 18,902,724 (-)EnsemblGRCh38hg38GRCh38
GRCh37119,197,924 - 19,229,049 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36119,070,513 - 19,101,659 (-)NCBINCBI36Build 36hg18NCBI36
Build 34118,943,231 - 18,974,378NCBI
Celera117,525,220 - 17,556,609 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef117,442,100 - 17,473,468 (-)NCBIHuRef
CHM1_1119,307,273 - 19,338,658 (-)NCBICHM1_1
T2T-CHM13v2.0118,691,214 - 18,722,363 (-)NCBIT2T-CHM13v2.0
Aldh4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394139,348,404 - 139,377,002 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4139,350,177 - 139,377,001 (+)EnsemblGRCm39 Ensembl
GRCm384139,622,871 - 139,649,691 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4139,622,866 - 139,649,690 (+)EnsemblGRCm38mm10GRCm38
MGSCv374139,178,809 - 139,205,606 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364138,895,086 - 138,921,763 (+)NCBIMGSCv36mm8
Celera4141,417,063 - 141,444,074 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.79NCBI
Aldh4a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85157,163,189 - 157,188,673 (+)NCBIGRCr8
mRatBN7.25151,880,002 - 151,905,491 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5151,830,701 - 151,925,345 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5154,578,425 - 154,603,973 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05156,352,798 - 156,378,348 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05156,333,760 - 156,359,284 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05158,090,238 - 158,115,725 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5158,042,587 - 158,135,733 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05161,829,323 - 161,854,796 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45158,437,691 - 158,453,827 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5150,256,652 - 150,282,086 (+)NCBICelera
Cytogenetic Map5q36NCBI
Aldh4a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955527338,593 - 372,872 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955527338,593 - 369,528 (+)NCBIChiLan1.0ChiLan1.0
ALDH4A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21208,212,985 - 208,244,303 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11207,329,575 - 207,360,881 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0117,829,723 - 17,861,008 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1118,878,421 - 18,909,615 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl118,878,421 - 18,909,615 (-)Ensemblpanpan1.1panPan2
ALDH4A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1279,688,078 - 79,712,340 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl279,688,086 - 79,710,540 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha276,202,258 - 76,226,797 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0280,311,305 - 80,335,987 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl280,311,248 - 80,335,984 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1277,070,827 - 77,093,559 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,080,932 - 78,105,430 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0279,151,584 - 79,176,100 (+)NCBIUU_Cfam_GSD_1.0
Aldh4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505839,392,819 - 39,421,970 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364745,218,686 - 5,246,664 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364745,217,601 - 5,246,718 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALDH4A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl677,374,002 - 77,404,036 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1677,373,999 - 77,404,015 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2671,494,105 - 71,512,632 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Aldh4a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247644,051,178 - 4,082,142 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247644,051,999 - 4,081,954 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_007980283   ⟹   XP_007978474
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.120113,661,850 - 113,693,665 (+)NCBI
Vero_WHO_p1.0NW_0236660332,463,684 - 2,495,495 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037988308   ⟹   XP_037844236
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660332,463,684 - 2,495,495 (-)NCBI
RefSeq Acc Id: XM_037988735   ⟹   XP_037844663
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660332,463,684 - 2,495,298 (-)NCBI
RefSeq Acc Id: XR_494486
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.120113,661,886 - 113,692,239 (+)NCBI
Vero_WHO_p1.0NW_0236660332,465,066 - 2,495,495 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007978474 (Get FASTA)   NCBI Sequence Viewer  
  XP_037844236 (Get FASTA)   NCBI Sequence Viewer  
  XP_037844663 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017135.1
RefSeq Acc Id: XP_007978474   ⟸   XM_007980283
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037844236   ⟸   XM_037988308
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037844663   ⟸   XM_037988735
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S8E6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000872 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017661.1 UniProtKB/TrEMBL
InterPro Ald_DH/histidinol_DH UniProtKB/TrEMBL
  Ald_DH_C UniProtKB/TrEMBL
  Ald_DH_CS_CYS UniProtKB/TrEMBL
  Ald_DH_CS_GLU UniProtKB/TrEMBL
  Ald_DH_N UniProtKB/TrEMBL
  Aldehyde_DH_dom UniProtKB/TrEMBL
  P5CDH/ALDH4A1 UniProtKB/TrEMBL
NCBI Gene ALDH4A1 ENTREZGENE
PANTHER 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FAMILY MEMBER UniProtKB/TrEMBL
  DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Aldedh UniProtKB/TrEMBL
PROSITE ALDEHYDE_DEHYDR_CYS UniProtKB/TrEMBL
  ALDEHYDE_DEHYDR_GLU UniProtKB/TrEMBL
Superfamily-SCOP ALDH-like UniProtKB/TrEMBL
UniProt A0A0D9S8E6 ENTREZGENE, UniProtKB/TrEMBL