PYCR2 (pyrroline-5-carboxylate reductase 2) - Rat Genome Database

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Gene: PYCR2 (pyrroline-5-carboxylate reductase 2) Chlorocebus sabaeus
Analyze
Symbol: PYCR2
Name: pyrroline-5-carboxylate reductase 2
RGD ID: 18355058
Description: ENCODES a protein that exhibits oxidoreductase activity (inferred); pyrroline-5-carboxylate reductase activity (inferred); INVOLVED IN cellular response to oxidative stress (inferred); L-proline biosynthetic process (inferred); proline biosynthetic process (inferred); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); hypomyelinating leukodystrophy 10 (ortholog); FOUND IN cytoplasm (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pyrroline-5-carboxylate reductase family member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,846,518 - 3,850,976 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,846,501 - 3,851,856 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660553,852,944 - 3,857,403 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PYCR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,846,518 - 3,850,976 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,846,501 - 3,851,856 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660553,852,944 - 3,857,403 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PYCR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,919,878 - 225,924,250 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,919,877 - 225,924,340 (-)EnsemblGRCh38hg38GRCh38
GRCh371226,107,578 - 226,111,950 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,174,203 - 224,178,588 (-)NCBINCBI36Build 36hg18NCBI36
Build 341222,414,315 - 222,418,700NCBI
Celera1199,298,629 - 199,303,014 (-)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1196,625,292 - 196,629,755 (-)NCBIHuRef
CHM1_11227,379,901 - 227,384,364 (-)NCBICHM1_1
T2T-CHM13v2.01225,107,658 - 225,112,030 (-)NCBIT2T-CHM13v2.0
Pycr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,731,839 - 180,735,653 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,731,858 - 180,735,653 (+)EnsemblGRCm39 Ensembl
GRCm381180,904,274 - 180,908,088 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,904,293 - 180,908,088 (+)EnsemblGRCm38mm10GRCm38
MGSCv371182,834,405 - 182,838,219 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,740,984 - 182,744,763 (+)NCBIMGSCv36mm8
Celera1187,967,388 - 187,971,204 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.46NCBI
Pycr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,158,236 - 95,162,030 (+)NCBIGRCr8
mRatBN7.21392,626,462 - 92,630,256 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,626,471 - 92,634,184 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1395,131,781 - 95,135,575 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,531,710 - 96,535,504 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,706,406 - 93,710,200 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,184,624 - 99,188,418 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,184,564 - 99,188,431 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,182,905 - 104,186,734 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,633,455 - 96,637,249 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11396,822,390 - 96,826,184 (+)NCBI
Celera1392,171,198 - 92,174,992 (+)NCBICelera
Cytogenetic Map13q26NCBI
Pycr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955489138,600 - 143,112 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955489138,600 - 143,112 (-)NCBIChiLan1.0ChiLan1.0
PYCR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2123,612,831 - 23,617,694 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1123,561,603 - 23,566,049 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01201,381,270 - 201,385,703 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11206,381,539 - 206,386,002 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,381,539 - 206,386,002 (-)Ensemblpanpan1.1panPan2
PYCR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,902,705 - 38,905,924 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,384,909 - 38,388,130 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,736,696 - 38,739,925 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl738,736,694 - 38,739,920 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1738,576,503 - 38,579,717 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,584,643 - 38,587,863 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,854,425 - 38,857,653 (+)NCBIUU_Cfam_GSD_1.0
Pycr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934452,020,591 - 52,025,713 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365262,720,521 - 2,726,762 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365262,721,579 - 2,726,699 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PYCR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1013,838,085 - 13,845,894 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11013,841,755 - 13,845,900 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21015,943,366 - 15,947,506 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pycr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480731,830 - 63,985 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480737,742 - 63,887 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 10 49
Low 10 11
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000014411   ⟹   ENSCSAP00000012385
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl253,846,501 - 3,851,856 (+)Ensembl
RefSeq Acc Id: XM_007988276   ⟹   XP_007986467
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1253,846,518 - 3,850,976 (+)NCBI
Vero_WHO_p1.0NW_0236660553,852,944 - 3,857,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007988277   ⟹   XP_007986468
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1253,846,526 - 3,850,976 (+)NCBI
Vero_WHO_p1.0NW_0236660553,852,950 - 3,857,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007988278   ⟹   XP_007986469
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1253,846,525 - 3,850,976 (+)NCBI
Vero_WHO_p1.0NW_0236660553,852,950 - 3,857,403 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007986467 (Get FASTA)   NCBI Sequence Viewer  
  XP_007986468 (Get FASTA)   NCBI Sequence Viewer  
  XP_007986469 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012385.1
RefSeq Acc Id: XP_007986467   ⟸   XM_007988276
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RUU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007986469   ⟸   XM_007988278
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RUU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007986468   ⟸   XM_007988277
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RUU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000012385   ⟸   ENSCSAT00000014411


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016314 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014411.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
  ProC C-terminal domain-like UniProtKB/TrEMBL
InterPro 6-PGluconate_DH-like_C_sf UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  P5C_Rdtase_cat_N UniProtKB/TrEMBL
  P5CR_dimer UniProtKB/TrEMBL
  Pyrroline-COOH_reductase UniProtKB/TrEMBL
KEGG Report csab:103230000 UniProtKB/TrEMBL
NCBI Gene PYCR2 ENTREZGENE
PANTHER PTHR11645 UniProtKB/TrEMBL
  PYRROLINE-5-CARBOXYLATE REDUCTASE 2 UniProtKB/TrEMBL
Pfam F420_oxidored UniProtKB/TrEMBL
  P5CR_dimer UniProtKB/TrEMBL
PIRSF Pyrrol-5-carb_rd UniProtKB/TrEMBL
PROSITE P5CR UniProtKB/TrEMBL
Superfamily-SCOP SSF48179 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A0A0D9RUU6 ENTREZGENE, UniProtKB/TrEMBL