LOC103227159 (olfactory receptor 2A14) - Rat Genome Database

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Gene: LOC103227159 (olfactory receptor 2A14) Chlorocebus sabaeus
Analyze
Symbol: LOC103227159 (Ensembl: OR2A14)
Name: olfactory receptor 2A14 (Ensembl:olfactory receptor family 2 subfamily A member 14)
RGD ID: 18351594
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121112,866,607 - 112,869,232 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21112,868,122 - 112,869,054 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660729,641,120 - 9,642,051 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC103227159
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121112,866,607 - 112,869,232 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21112,868,122 - 112,869,054 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660729,641,120 - 9,642,051 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
OR2A14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387144,123,176 - 144,131,188 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7144,123,176 - 144,131,188 (+)EnsemblGRCh38hg38GRCh38
GRCh377143,820,269 - 143,828,281 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367143,457,139 - 143,458,071 (+)NCBINCBI36Build 36hg18NCBI36
Build 347143,263,853 - 143,264,786NCBI
Celera7138,459,489 - 138,460,418 (+)NCBICelera
Cytogenetic Map7q35NCBI
HuRef7138,025,750 - 138,026,679 (+)NCBIHuRef
CHM1_17143,763,557 - 143,764,486 (+)NCBICHM1_1
T2T-CHM13v2.07145,403,642 - 145,411,657 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27143,164,431 - 143,165,360 (+)NCBI
Or2a14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39643,130,241 - 43,131,173 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl643,123,501 - 43,134,103 (+)EnsemblGRCm39 Ensembl
GRCm38643,153,307 - 43,154,239 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl643,146,567 - 43,157,169 (+)EnsemblGRCm38mm10GRCm38
MGSCv37643,103,306 - 43,104,238 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36643,082,914 - 43,083,846 (+)NCBIMGSCv36mm8
Celera643,101,055 - 43,101,987 (+)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map621.09NCBI
Or2a14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8472,942,353 - 72,943,285 (+)NCBIGRCr8
mRatBN7.2471,942,343 - 71,943,275 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl471,924,028 - 71,944,694 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx476,933,245 - 76,934,176 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0472,846,469 - 72,847,400 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0471,235,501 - 71,236,433 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0472,566,790 - 72,567,722 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl472,566,790 - 72,567,722 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04137,264,622 - 137,265,554 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4470,881,512 - 70,882,444 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1471,157,641 - 71,158,574 (+)NCBI
Celera466,892,063 - 66,892,995 (+)NCBICelera
Cytogenetic Map4q24NCBI
OR2A14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1165,795,909 - 5,796,841 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl165,795,755 - 5,796,841 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0165,649,711 - 5,650,643 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl165,649,711 - 5,650,643 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1165,589,677 - 5,590,609 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0165,447,527 - 5,448,459 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0165,517,052 - 5,517,984 (-)NCBIUU_Cfam_GSD_1.0
LOC100513612
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.19113,544,735 - 113,548,093 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29124,994,680 - 124,995,649 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 14 18 35
Below cutoff 22 2 25

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007983326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000019610   ⟹   ENSCSAP00000019019
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl21112,868,122 - 112,869,054 (+)Ensembl
RefSeq Acc Id: XM_007983326   ⟹   XP_007981517
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.121112,866,607 - 112,869,232 (+)NCBI
Vero_WHO_p1.0NW_0236660729,641,120 - 9,642,051 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007981517 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000019019.1
Reference Protein Sequences
RefSeq Acc Id: XP_007981517   ⟸   XM_007983326
- UniProtKB: A0A0D9SDT0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000019019   ⟸   ENSCSAT00000019610


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019520 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019610.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report csab:103227159 UniProtKB/TrEMBL
NCBI Gene LOC103227159 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0D9SDT0 ENTREZGENE, UniProtKB/TrEMBL