DDX55 (DEAD-box helicase 55) - Rat Genome Database

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Gene: DDX55 (DEAD-box helicase 55) Chlorocebus sabaeus
Analyze
Symbol: DDX55
Name: DEAD-box helicase 55
RGD ID: 18350705
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); helicase activity (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-dependent RNA helicase DDX55
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,930,642 - 118,949,331 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,930,683 - 118,948,814 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037126,326,273 - 126,346,294 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleolus  (IEA)
nucleoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DDX55
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,930,642 - 118,949,331 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,930,683 - 118,948,814 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037126,326,273 - 126,346,294 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
DDX55
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,602,099 - 123,620,943 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,602,077 - 123,620,943 (+)EnsemblGRCh38hg38GRCh38
GRCh3712124,086,646 - 124,105,490 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,652,625 - 122,671,435 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412122,611,551 - 122,630,362NCBI
Celera12123,683,109 - 123,701,918 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12121,048,035 - 121,066,826 (+)NCBIHuRef
CHM1_112123,907,616 - 123,926,431 (+)NCBICHM1_1
T2T-CHM13v2.012123,600,963 - 123,619,807 (+)NCBIT2T-CHM13v2.0
Ddx55
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,690,895 - 124,707,723 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,690,927 - 124,707,723 (+)EnsemblGRCm39 Ensembl
GRCm385124,552,832 - 124,569,660 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,552,864 - 124,569,660 (+)EnsemblGRCm38mm10GRCm38
MGSCv375125,002,873 - 125,018,947 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,813,504 - 124,829,590 (+)NCBIMGSCv36mm8
Celera5121,629,125 - 121,645,637 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.66NCBI
Ddx55
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,695,444 - 37,711,198 (-)NCBIGRCr8
mRatBN7.21232,034,462 - 32,050,218 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,034,462 - 32,050,219 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,213,387 - 33,229,625 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,824,708 - 33,840,948 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,876,575 - 32,892,814 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,453,005 - 37,468,935 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,453,005 - 37,468,935 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,324,015 - 39,339,763 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,147,211 - 33,162,925 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,011,099 - 33,026,931 (-)NCBI
Celera1233,723,880 - 33,740,275 (-)NCBICelera
Cytogenetic Map12q15NCBI
Ddx55
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,389,195 - 5,401,873 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,389,195 - 5,401,885 (-)NCBIChiLan1.0ChiLan1.0
DDX55
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,675,799 - 131,695,839 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,672,558 - 131,692,216 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012121,187,465 - 121,206,287 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,414,730 - 125,433,147 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12125,414,730 - 125,433,147 (+)Ensemblpanpan1.1panPan2
DDX55
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,022,739 - 6,036,539 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,023,288 - 6,036,782 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,185,611 - 6,199,418 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,272,817 - 6,286,633 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,272,817 - 6,286,617 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,206,294 - 6,220,107 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,298,665 - 6,312,477 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,251,877 - 6,265,689 (-)NCBIUU_Cfam_GSD_1.0
Ddx55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,257,907 - 158,282,235 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,200,064 - 1,221,521 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,198,281 - 1,221,497 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDX55
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,368,023 - 29,387,776 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,368,018 - 29,388,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,060,310 - 31,080,076 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ddx55
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,401,323 - 23,412,804 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,401,267 - 23,413,002 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 21 34
Low 15 20 26
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000000075   ⟹   ENSCSAP00000015976
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl11118,930,683 - 118,948,814 (+)Ensembl
RefSeq Acc Id: XM_008005127   ⟹   XP_008003318
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.111118,930,642 - 118,949,331 (+)NCBI
Vero_WHO_p1.0NW_023666037126,326,273 - 126,346,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008005128   ⟹   XP_008003319
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.111118,930,786 - 118,949,331 (+)NCBI
Vero_WHO_p1.0NW_023666037126,326,716 - 126,345,468 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037995420   ⟹   XP_037851348
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037126,327,508 - 126,346,294 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008003318 (Get FASTA)   NCBI Sequence Viewer  
  XP_008003319 (Get FASTA)   NCBI Sequence Viewer  
  XP_037851348 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015976
  ENSCSAP00000015976.1
RefSeq Acc Id: XP_008003318   ⟸   XM_008005127
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S537 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008003319   ⟸   XM_008005128
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000015976   ⟸   ENSCSAT00000000075
RefSeq Acc Id: XP_037851348   ⟸   XM_037995420
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002057 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000075.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/TrEMBL
  DUF4217 UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RNA-helicase_DEAD-box_CS UniProtKB/TrEMBL
  RNA_helicase_DEAD_Q_motif UniProtKB/TrEMBL
KEGG Report csab:103239333 UniProtKB/TrEMBL
NCBI Gene DDX55 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE DDX55 UniProtKB/TrEMBL
  RNA HELICASE UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  DUF4217 UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
PROSITE DEAD_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  Q_MOTIF UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  DUF4217 UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9S537 ENTREZGENE, UniProtKB/TrEMBL