AKAP9 (A-kinase anchoring protein 9) - Rat Genome Database

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Gene: AKAP9 (A-kinase anchoring protein 9) Chlorocebus sabaeus
Analyze
Symbol: AKAP9
Name: A-kinase anchoring protein 9
RGD ID: 18347130
Description: ENCODES a protein that exhibits protein kinase A regulatory subunit binding (ortholog); INVOLVED IN negative regulation of adenylate cyclase activity (ortholog); response to electrical stimulus (ortholog); Sertoli cell development (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH amyloidosis (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); Arsenic Poisoning (ortholog); FOUND IN 9+2 motile cilium (ortholog); ciliary basal body (ortholog); dendritic branch (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: A-kinase anchor protein 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12156,889,669 - 57,061,526 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2156,890,183 - 57,061,232 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604247,204,451 - 47,376,002 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AKAP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12156,889,669 - 57,061,526 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2156,890,183 - 57,061,232 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604247,204,451 - 47,376,002 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
AKAP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38791,940,862 - 92,110,673 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl791,940,840 - 92,110,673 (+)EnsemblGRCh38hg38GRCh38
GRCh37791,570,176 - 91,739,987 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36791,408,128 - 91,577,925 (+)NCBINCBI36Build 36hg18NCBI36
Build 34791,214,842 - 91,384,640NCBI
Celera786,274,770 - 86,444,535 (+)NCBICelera
Cytogenetic Map7q21.2NCBI
HuRef786,177,732 - 86,347,418 (+)NCBIHuRef
CHM1_1791,500,226 - 91,670,057 (+)NCBICHM1_1
T2T-CHM13v2.0793,182,145 - 93,351,954 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2790,900,316 - 91,069,225 (+)NCBI
Akap9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3953,977,410 - 4,130,204 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl53,978,054 - 4,131,310 (+)EnsemblGRCm39 Ensembl
GRCm3853,927,736 - 4,080,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl53,928,054 - 4,081,310 (+)EnsemblGRCm38mm10GRCm38
MGSCv3753,928,186 - 4,080,204 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3653,934,296 - 4,086,209 (+)NCBIMGSCv36mm8
Celera53,864,493 - 4,010,277 (+)NCBICelera
Cytogenetic Map5A1NCBI
cM Map52.26NCBI
Akap9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8431,011,475 - 31,147,338 (-)NCBIGRCr8
mRatBN7.2430,056,738 - 30,192,716 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl430,056,738 - 30,192,606 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx435,029,487 - 35,165,360 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0430,955,579 - 31,091,450 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0429,351,555 - 29,487,422 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0427,195,346 - 27,331,582 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl427,195,346 - 27,331,582 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0427,098,572 - 27,234,808 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4426,772,929 - 26,803,149 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1426,883,982 - 26,885,323 (-)NCBI
Celera425,482,592 - 25,617,928 (-)NCBICelera
Cytogenetic Map4q13NCBI
Akap9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554328,932,952 - 9,095,065 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554328,933,037 - 9,090,872 (+)NCBIChiLan1.0ChiLan1.0
AKAP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26109,829,810 - 109,996,208 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17158,094,445 - 158,260,850 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0783,942,590 - 84,108,648 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1797,540,080 - 97,706,122 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl797,540,356 - 97,705,608 (+)Ensemblpanpan1.1panPan2
AKAP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11417,590,256 - 17,743,646 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1417,590,772 - 17,740,294 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1417,151,819 - 17,305,050 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01417,396,944 - 17,550,371 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1417,397,094 - 17,550,290 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11417,555,293 - 17,708,724 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01417,269,978 - 17,423,205 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01417,543,776 - 17,697,085 (+)NCBIUU_Cfam_GSD_1.0
Akap9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511830,994,258 - 31,121,581 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366212,246,179 - 2,374,454 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366212,247,082 - 2,374,407 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AKAP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl971,895,635 - 72,054,897 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1971,895,615 - 72,054,898 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2978,631,028 - 78,790,295 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Akap9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248091,103,538 - 1,257,809 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248091,101,941 - 1,258,402 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 25 7 60
Low 11 13
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007982193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000010624   ⟹   ENSCSAP00000008714
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2156,890,183 - 57,061,232 (-)Ensembl
RefSeq Acc Id: XM_007982199   ⟹   XP_007980390
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12156,889,669 - 57,061,519 (-)NCBI
Vero_WHO_p1.0NW_02366604247,204,451 - 47,376,002 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007980390 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008714.1
Reference Protein Sequences
RefSeq Acc Id: XP_007980390   ⟸   XM_007982199
- UniProtKB: A0A0D9RJC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000008714   ⟸   ENSCSAT00000010624


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012537 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010624.1 UniProtKB/TrEMBL
InterPro AKAP9/Pericentrin UniProtKB/TrEMBL
  ELK_dom UniProtKB/TrEMBL
  PACT_domain UniProtKB/TrEMBL
NCBI Gene AKAP9 ENTREZGENE
PANTHER A-KINASE ANCHOR PROTEIN 9 UniProtKB/TrEMBL
  PTHR44981 UniProtKB/TrEMBL
Pfam PACT_coil_coil UniProtKB/TrEMBL
SMART ELK UniProtKB/TrEMBL
UniProt A0A0D9RJC5 ENTREZGENE, UniProtKB/TrEMBL