CD163L1 (CD163 molecule like 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CD163L1 (CD163 molecule like 1) Chlorocebus sabaeus
Analyze
Symbol: CD163L1
Name: CD163 molecule like 1
RGD ID: 18344862
Description: ENCODES a protein that exhibits serine-type endopeptidase activity (inferred); INVOLVED IN zymogen activation (inferred); ASSOCIATED WITH COVID-19 (ortholog); developmental and epileptic encephalopathy 21 (ortholog); genetic disease (ortholog); FOUND IN extracellular space (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: scavenger receptor cysteine-rich type 1 protein M160
RGD Orthologs
Human
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,397,421 - 7,472,069 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,411,406 - 7,471,764 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666063737,922 - 813,630 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CD163L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,397,421 - 7,472,069 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,411,406 - 7,471,764 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666063737,922 - 813,630 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CD163L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,318,768 - 7,444,153 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,346,685 - 7,479,897 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,507,556 - 7,596,749 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,398,823 - 7,488,016 (-)NCBINCBI36Build 36hg18NCBI36
Celera129,082,999 - 9,171,979 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef127,320,202 - 7,409,407 (-)NCBIHuRef
CHM1_1127,506,531 - 7,595,718 (-)NCBICHM1_1
T2T-CHM13v2.0127,332,108 - 7,457,540 (-)NCBIT2T-CHM13v2.0
CD163L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,935,514 - 13,019,225 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,928,711 - 13,015,984 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,497,261 - 7,590,057 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,664,048 - 7,747,727 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,656,113 - 7,749,646 (-)Ensemblpanpan1.1panPan2
LOC611565
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,777,592 - 37,809,738 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,807,024 - 8,839,177 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,131,035 - 38,163,236 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12738,005,271 - 38,037,414 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,046,596 - 38,078,698 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,284,752 - 8,316,870 (+)NCBIUU_Cfam_GSD_1.0
CD163L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1563,488,674 - 63,514,536 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,984,974 - 66,021,657 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 31 14 52
Below cutoff 5 4 8

Sequence


RefSeq Acc Id: ENSCSAT00000007916   ⟹   ENSCSAP00000006077
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl117,411,406 - 7,471,764 (-)Ensembl
RefSeq Acc Id: XM_007967470   ⟹   XP_007965661
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1117,397,421 - 7,472,061 (-)NCBI
Vero_WHO_p1.0NW_023666063737,922 - 813,630 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007965661 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006077.1
RefSeq Acc Id: XP_007965661   ⟸   XM_007967470
- UniProtKB: A0A0D9RBT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000006077   ⟸   ENSCSAT00000007916


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009836 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007916.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.250.10 UniProtKB/TrEMBL
InterPro SRCR UniProtKB/TrEMBL
  SRCR-like_dom UniProtKB/TrEMBL
  SRCR-like_dom_sf UniProtKB/TrEMBL
NCBI Gene CD163L1 ENTREZGENE
PANTHER SCAVENGER RECEPTOR CYSTEINE-RICH TYPE 1 PROTEIN M160 UniProtKB/TrEMBL
  SCAVENGER RECEPTOR DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam SRCR UniProtKB/TrEMBL
PRINTS SPERACTRCPTR UniProtKB/TrEMBL
PROSITE SRCR_1 UniProtKB/TrEMBL
  SRCR_2 UniProtKB/TrEMBL
SMART SM00202 UniProtKB/TrEMBL
Superfamily-SCOP SSF56487 UniProtKB/TrEMBL
UniProt A0A0D9RBT8 ENTREZGENE, UniProtKB/TrEMBL